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11-5129-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 1669519 [Map]; Strand: c
      • AT1G05580.2 - [+] show detail - cation/H+ exchanger 23
        Distance: -615; Region: promoter
      • AT1G05580.1 - [+] show detail - cation/H+ exchanger 23
        Distance: -617; Region: promoter
      • AT1G05590.1 - [+] show detail - beta-hexosaminidase 2
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 11-5129-1 - 5-prime edge
    CGTTACGCAG CTCTTGGATC ATGTGATGAC AGTGACGCCG CGTGACAGCT 
    ATGGAGACAC TAGGTTAAAC CCACAAAGCT GTATAAATAA GACTCACGAT
    TGTAATCTCA AATCAAGTTG AAAGCAATAA AACAAAAGAC TTTCGATTTC
    ATATTCTTCC TTTCATACTC TACAAAGTCT TGTGAACTAC TTTGCTTCCA
    GAAGATCTGG ATTCTGGATT GATTTGATAC TTTTGCATTA TAGTAATAAA
    AAAATTCTCG TTGCATATTT ATTGTATTCT ACTACTTGTC TATTTTAATT
    ATTATTAAAA AAGAATCTTA TTGTCTTATG TTAATAATAA ATTAATAATA
    GACTAAACTA TCTTATTATT GTTAAGAACT GCCAAACAAA AAAAAAGAAA
    GAAAAAANCT TGTNTAATTT GTTAANAAAA AAAACATNTN TAAGTTTTAT
    TGAAAATAAT TTATTCNCAN ATTTTGTAAC CGTACAATTA GAAATCGGAC
    AAAAATATGT TGAAACAAGT GATCATTTTC AACCAGCCGT TTAAAAAAGC
    CCCTANCAGC AAAAACATAA ATNTGATAAG CCCATTTTAA AACGAGTGGT
    TAATGAATTA CCANCCNGGG CCGNGACCAC CNGNCCCCTT NNA
  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 5879443 [Map]; Strand: c
      • AT4G09255.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: 11-5129-1 - 3-prime edge
    CGGTTCCTCG TCGCTACGTC CGTATTGTCT GGGAATCTCT CTGCAACAGC 
    TCTGTTCTTG TCTTTTGTTG CAGGTTGTCG TTGAGAGATG ATGGGCTCAG
    CGTTGTTGGA GACTTGTCTG GAATTGAGGT GCATTGGTTT TGAGCCCATT
    TCCTGAATTG ATTTTGAGCC CAATGCCAAA ACTGTGCCGT TTGGTGTAGC
    TGTGTTGATA CTCCCCCTCA AACTTGGAGT AGGTGGGAAA TCGACGCCAA
    GTTTGAAGCG AAGAGATTCG AAAGGAGTCT TGGCTAGAGA CTTCGTAAAG
    ATATCAGCAA GCTGAAGGTA ACCCGGTATG TGATGGACGA TGAGCTCACC
    AAACGCCACT TGTTCTCTGA CATAGTGGTA GTGAGTTGCA AAATGTTTGG
    TCCGAGCGTG GAAAGACGGA TTTGCTGTAA GATAGACGGC GGAGAGATTA
    TCACAGAAGA GTTCTGGTGT CTGTAACCGT GTAATACCCA GATCACGGAG
    CAAGTTAACG AGCCATGTGA CCTTCGATGC TGTATCTGAC ATANATCTGT
    ATTCAGCTTC GGTTGAACTT TTGGCGACAC TGTCTTGCTT TCATGAGGAC
    CAGGAGATGA GATTGTTTCC AAGGAAAGTG CAGAAGCCAC CAGTGGAACG
    ACGTGTACCG TGACATCCAG CGTGATCACT GTCACTATAA GCCCGGAGNG
    TGCAATCTGT

AT1G05580.1

Model type
Protein coding
Short Description
cation/H+ exchanger 23
Curator Summary
member of Putative Na+/H+ antiporter family
Computational Description
cation/H+ exchanger 23 (CHX23); FUNCTIONS IN: monovalent cation:hydrogen antiporter activity, sodium:hydrogen antiporter activity; INVOLVED IN: cation transport; LOCATED IN: integral to membrane; EXPRESSED IN: male gametophyte, leaf; CONTAINS InterPro DOMAIN/s: Cation/H+ exchanger (InterPro:IPR006153); BEST Arabidopsis thaliana protein match is: cation/H+ exchanger 21 (TAIR:AT2G31910.1); Has 6204 Blast hits to 6178 proteins in 1654 species: Archae - 257; Bacteria - 4841; Metazoa - 0; Fungi - 132; Plants - 575; Viruses - 0; Other Eukaryotes - 399 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G05580.2

Model type
Protein coding
Short Description
cation/H+ exchanger 23
Curator Summary
member of Putative Na+/H+ antiporter family
Computational Description
cation/H+ exchanger 23 (CHX23); FUNCTIONS IN: monovalent cation:hydrogen antiporter activity, sodium:hydrogen antiporter activity; INVOLVED IN: cation transport; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: male gametophyte, leaf; CONTAINS InterPro DOMAIN/s: Cation/H+ exchanger (InterPro:IPR006153); BEST Arabidopsis thaliana protein match is: cation/H+ exchanger 21 (TAIR:AT2G31910.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G05590.1

Model type
Protein coding
Short Description
beta-hexosaminidase 2
Curator Summary
Encodes a protein with β-hexosaminidase activity (the enzyme is active with p-nitrophenyl-β-N-acetylglucosaminide as substrate but displayed only a minor activity toward p-nitrophenyl-β-N-acetylgalactosaminide). Chitotriose-PA was digested almost completely overnight by a 50% ammonium sulfate fraction of a supernatant yeast expressing AtHEX3.
Computational Description
beta-hexosaminidase 2 (HEXO2); FUNCTIONS IN: UDP-glucosyltransferase activity, hexosaminidase activity, beta-N-acetylhexosaminidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 20, catalytic core (InterPro:IPR015883), Beta-N-acetylhexosaminidase, subunit a/b (InterPro:IPR015882), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 20 (InterPro:IPR001540), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: beta-hexosaminidase 1 (TAIR:AT3G55260.1); Has 3806 Blast hits to 3725 proteins in 709 species: Archae - 2; Bacteria - 2403; Metazoa - 477; Fungi - 234; Plants - 128; Viruses - 0; Other Eukaryotes - 562 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G09255.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
copia-like retrotransposon family, has a 5.9e-147 P-value blast match to dbj|BAA78426.1| polyprotein (AtRE2-1) (Arabidopsis thaliana) (Ty1_Copia-element)
Link
InterPro Scan - TAIR