1. Home
  2. Mutant Lines
  3. 11-5180-1

11-5180-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 2415160 [Map]; Strand: c
      • AT1G07800.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: 11-5180-1 - 3-prime edge
    CGGTGGAGAC TATCTCGCAT GTTCTTAGAG ACTGCCCTTC GATGTCGGGA 
    ATATGGAGCA GGATTGTTCC TAGGAGGAAA CAACAAGCGT TCTTTACGAA
    GTCATTATTT GAGTGGCTCT TTGAGAATCT CTGTGAGCAG GTTAACAGTG
    GAAGAGGGGC CTTGATCCAC GATGTTTGCA CTAGCAGTTT GGTGGGGGTG
    GAAGTGGAGG TGCNNGTAAT ATTTTTGGTG AGAATAGAAG GTGTCGGGAC
    AGGGTACGCT TTGTGAGGGA TTTGGCGAAG GAGGTTTCAG CAGCTAATCA
    ACAGTTGGTC ACTCAGGGAG GTCGACGCTC GCGCGTAGAG ATTCTGGTAG
    GGTGGGAGAA ACCGTTGCTT GGCTGGTTGA CAGTTAATAC GGATGGGGCT
    TCGCGTGGGA ATCCGGGTTT AGCTGCTGCA NGAGGAGTAT TACGAGATCA
    TGANGGAANG TGGTGCGGAN GTTTTTCTTT TGAATATAGG GGAGATCTTC
    GGCACCAATG GCGGATTTAT GGGGGAGTCT ATNACGGGAC TCCATTTTCC
    CATGGGACAN GAANGCACCC GTANGTANTG TTGGGAGGTG GATNCTGCTA
    TTNGTTTGTT GGAGTTCTTN ANNACAGGGT TATNTGANCA TTNACCCNGA
    TNTCGTTTTC TGGNCNTANT NGTNCCCTNG GNTNTTTNNT NGANAGGANT
    NGNAANTTAC TAATTTGTNT NTNCTTNTTT TNGGATAGNC N

AT1G07800.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
pseudogene, similar to putative reverse transcriptase., blastp match of 24% identity and 5.3e-10 P-value to GP|21450442|gb|AAM54146.1|AC104616_5|AC104616 putative reverse transcriptase. {Oryza sativa (japonica cultivar-group)}
Link
InterPro Scan - TAIR