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11-5182-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 24539163 [Map]; Strand: w
      • AT1G65930.1 - [+] show detail - cytosolic NADP+-dependent isocitrate dehydrogenase
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: 11-5182-1 - 5-prime edge 
    CGTTTGAGAA GATCAAGGTG GCAAATCCCA TCGTCGAGAT GGATGGTGAG 
    ATCTTACTTC TCCTTCTCCT CTCTCGATCT CTTTCGCTAT CTATAATCAG 
    ATATTTTCGT TGATTGGATA CGAAATGATT TACNTTTCGC TTGCCTAGAT 
    TGTAACGAAG TTTCGTTGTT TGTTCTGATC TGATCTCTGG AATCTACGCA 
    TGTGTAAACT CGTTGATTGA TTTGGTTTTG GTGTATGATT ACGTTACAGA 
    TCGATAAAAT CGATAAAACC TTTAAGCTCT GTTCATGAGA TTGATTGATT 
    TATGAAAAAT CTGGACTCGA TTTCAAGTGT GGATTTGATT TACAGCTTTG 
    ATTCGGCGAA ATAGTTTCGA TATTTAAGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 24539047 [Map]; Strand: w
      • AT1G65930.1 - [+] show detail - cytosolic NADP+-dependent isocitrate dehydrogenase
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 11-5182-1 - 3-prime edge 
    CTCAAACGCC ATGGTTTTTT TTTGGTTTTC GGTTTTTGTG TGATTGACAG 
    AATTAATCGA TCGGATTTGA TATTCCGATC GTCGGAGATC TAGAAACGAG 
    AGAAGATCAA GCCGGAGAAG AAGATGCGAA GCCTGGTGAT GAGTGATGAA 
    GTAGGTGAAA TAGCTTGTAC AGGTCTTGAN AGTTGTTGTA TTTATGCTAT 
    TTAAAAGTTT GGATTATGTT ATTTTGACCC CGTTATTACN ATTTGTTTCA 
    TTTTGGTCCC TACTTTGATT TTTCGTTGTA GCCGCCACTT ATTGTATAAA 
    AGGGTCCCAC TAACAAAATT CAAAAGTCAT ATTCAACAAT ATGAATGCTA 
    AGTTTTAATT TATAGAATAA AGTTTGGGAA TATAATTACA AGCT

AT1G65930.1

Model type
Protein coding
Short Description
cytosolic NADP+-dependent isocitrate dehydrogenase
Curator Summary
Encodes a NADP+-isocitrate dehydrogenase that is believed to function in the cytosol. It appears to contribute to NADPH production under oxidative stress, and thereby to participate in redox signalling linked to defense responses.
Computational Description
cytosolic NADP+-dependent isocitrate dehydrogenase (cICDH); FUNCTIONS IN: isocitrate dehydrogenase (NADP+) activity, copper ion binding; INVOLVED IN: in 7 processes; LOCATED IN: cytosol, apoplast, plasma membrane; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 17 growth stages; CONTAINS InterPro DOMAIN/s: Isocitrate/isopropylmalate dehydrogenase (InterPro:IPR001804), Isocitrate dehydrogenase NADP-dependent, eukaryotic (InterPro:IPR004790), Isocitrate/isopropylmalate dehydrogenase, conserved site (InterPro:IPR019818); BEST Arabidopsis thaliana protein match is: isocitrate dehydrogenase (TAIR:AT1G54340.1); Has 5437 Blast hits to 5413 proteins in 1130 species: Archae - 48; Bacteria - 1243; Metazoa - 817; Fungi - 231; Plants - 475; Viruses - 0; Other Eukaryotes - 2623 (source: NCBI BLink).
Link
InterPro Scan - TAIR