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11-5200-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30087324 [Map]; Strand: w
      • AT1G79990.1 - [+] show detail - structural molecules
        Distance: 0; Region: intron11 (CDS)
      • AT1G79990.3 - [+] show detail - structural molecules
        Distance: 0; Region: intron7 (CDS)
      • AT1G79990.5 - [+] show detail - structural molecules
        Distance: 0; Region: intron7 (CDS)
    Flanking Genome Sequence: 11-5200-1 - 5-prime edge 
    GTTCTGATGA TCATACTGCT AAGGTCTGTA CTGAGCTTTC TTGCTTCTTT 
    GCAAGTTGTT TGCTACATAT GTGTGCTTGT ATGTATCTCC ATTTGTATTG 
    TTTGTATATA GGTTCGTGCA GGGTTTTCTG TTTGTATATT GTTCATAAAT 
    TTCTTCTGGA AGCAGGTGTG GGATTACCAA ACAAAGAGTT GCGTTCAGAC 
    TCTCGAAGGT CATACACACA ATGTTTCTGC AGTATCTTTT CATCCAGAGC 
    TACCTATAAT TATTACAGGA TC

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30087208 [Map]; Strand: w
      • AT1G79990.1 - [+] show detail - structural molecules
        Distance: 0; Region: exon11 (CDS)
      • AT1G79990.3 - [+] show detail - structural molecules
        Distance: 0; Region: exon7 (CDS)
      • AT1G79990.5 - [+] show detail - structural molecules
        Distance: 0; Region: exon7 (CDS)
    Flanking Genome Sequence: 11-5200-1 - 3-prime edge 
    ATCAGAACCA GTGATTAGGT ATGGTTTATC CCCACCAGTA AAGTAGTCTA 
    CACAGTTTAC CCCTTTGAGA TGTGCATCCA AAGTAAAATT TGGATC

AT1G79990.1

Model type
Protein coding
Short Description
structural molecules
Computational Description
structural molecules; FUNCTIONS IN: structural molecule activity; INVOLVED IN: intracellular protein transport, vesicle-mediated transport; LOCATED IN: membrane coat, endomembrane system, COPI vesicle coat; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), Coatomer, WD associated region (InterPro:IPR006692), WD40 repeat (InterPro:IPR001680), Integral membrane protein SYS1-related (InterPro:IPR019185), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Coatomer, beta' subunit (TAIR:AT1G52360.1); Has 74874 Blast hits to 32688 proteins in 816 species: Archae - 58; Bacteria - 8441; Metazoa - 30042; Fungi - 16255; Plants - 9898; Viruses - 0; Other Eukaryotes - 10180 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G79990.3

Model type
Protein coding
Short Description
structural molecules
Computational Description
structural molecules; FUNCTIONS IN: structural molecule activity; INVOLVED IN: intracellular protein transport, vesicle-mediated transport; LOCATED IN: membrane coat, COPI vesicle coat; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), Coatomer, WD associated region (InterPro:IPR006692), WD40-repeat-containing domain (InterPro:IPR017986), Coatomer, beta' subunit (InterPro:IPR016453), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781), G-protein beta WD-40 repeat, region (InterPro:IPR020472); BEST Arabidopsis thaliana protein match is: Coatomer, beta' subunit (TAIR:AT1G52360.1); Has 75407 Blast hits to 32587 proteins in 820 species: Archae - 58; Bacteria - 8535; Metazoa - 29979; Fungi - 16971; Plants - 9768; Viruses - 8; Other Eukaryotes - 10088 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G79990.5

Model type
Protein coding
Short Description
structural molecules
Computational Description
structural molecules; FUNCTIONS IN: structural molecule activity; INVOLVED IN: intracellular protein transport, vesicle-mediated transport; LOCATED IN: membrane coat, COPI vesicle coat; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), Coatomer, WD associated region (InterPro:IPR006692), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), Coatomer, beta' subunit (InterPro:IPR016453), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Coatomer, beta' subunit (TAIR:AT1G52360.1); Has 74269 Blast hits to 32109 proteins in 811 species: Archae - 56; Bacteria - 8450; Metazoa - 29737; Fungi - 16170; Plants - 9747; Viruses - 0; Other Eukaryotes - 10109 (source: NCBI BLink).
Link
InterPro Scan - TAIR