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11-5283-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 253220 [Map]; Strand: c
      • AT2G01560.1 - [+] show detail - Plant protein 1589 of unknown function
        Distance: -1414; Region: intergenic
      • AT2G01570.1 - [+] show detail - GRAS family transcription factor family protein
        Distance: 2029; Region: intergenic
    Flanking Genome Sequence: 11-5283-1 - 5-prime edge 
    GGGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTAGAGGTC CAATATTAAT TATTTTATTA CTTTTTCGGA 
    CGAACAGTTT CATTTATTAA TATTTATTTG CTTTTCAATT TTTCATCTTA 
    TGATATGACC TTTTTCCTCA AACTTTATTG GATATTTTTA TTTAACATGG 
    CNTTATGATT AGTCATCAGT CCTTGAAATA GTAATTCAAC TCCTTCAACA 
    AAGATAAGAA AGAATTAATG GCCTTTCATA GTTGTATATA TATTTTTCGA 
    TCGCAGTTAC TTGCCATGGC CCGTGAAACA TGACGATCTA TTTGTATTCA 
    ATTTCACATT TATTGAAGAC ATTGATTTCG AATGTAAAAT AATTGCACTC 
    GTTTATTGGA AAAAATACCA GCAAAAGTAA TAAAATATCA CGCCATATAC 
    AAGAACAAAA GAGAAGAAAT ATGTTGTCTT TGCTAGAATT TGACGGATTA 
    TCTAGACATT TAGAAAGTAA CAAAGGGCAT AATTAAATTT TGACCAAAAT 
    ATTACCTGAT AAATAATTTA AAAGCATCTG ATTTTTAATT AACTAATGTG 
    GACGTGGAAG TCTCATTGGT TCATTCCTTG GCTCATAGTT CATTAATAAT 
    TTATATCAAG AAGTATGAGG TTCGAATTTC AAATAATGCG ATCTATTAGT 
    AGAATCTGAG ACAAATATGT AGGATATATC CAACGATGTA CAAGAAAGAA 
    TT

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 253223 [Map]; Strand: c
      • AT2G01560.1 - [+] show detail - Plant protein 1589 of unknown function
        Distance: -1417; Region: intergenic
      • AT2G01570.1 - [+] show detail - GRAS family transcription factor family protein
        Distance: 2026; Region: intergenic
    Flanking Genome Sequence: 11-5283-1 - 3-prime edge 
    TTTGAAAACG GTAGAGGTAT TTTACCGACC GTTACCGACC GTTTTCATCC 
    CTGCCTCTCG AATATGGATA ATTCAGAATT AGGTCAAATA TTACATTCAT 
    TTAACTGGTC CTTGACATAC ACGAATAAAA ACTTTTTTAG CTATCTTTAA 
    AATAAACCTC TACAAATTTT TATTATTCTT ATTTGAATT

AT2G01560.1

Model type
Protein coding
Short Description
Plant protein 1589 of unknown function
Computational Description
Plant protein 1589 of unknown function; CONTAINS InterPro DOMAIN/s: Conserved hypothetical protein CHP01589, plant (InterPro:IPR006476); Has 88 Blast hits to 88 proteins in 31 species: Archae - 0; Bacteria - 9; Metazoa - 4; Fungi - 11; Plants - 55; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01570.1

Model type
Protein coding
Short Description
GRAS family transcription factor family protein
Curator Summary
Member of the VHIID/DELLA regulatory family. Contains homopolymeric serine and threonine residues, a putative nuclear localization signal, leucine heptad repeats, and an LXXLL motif. Putative transcriptional regulator repressing the gibberellin response and integration of phytohormone signalling. DELLAs repress cell proliferation and expansion that drives plant growth. The protein undergoes degradation in response to GA via the 26S proteasome. RGA1 binds to PIF3 and inhibits its DNA binding activity and thus affects the expression of PIF3 regulated genes. RGA may be involved in reducing ROS accumulation in response to stress by up-regulating the transcription of superoxide dismutases. Represses GA-induced vegetative growth and floral initiation. Rapidly degraded in response to GA. Involved in fruit and flower development.
Computational Description
REPRESSOR OF GA1-3 1 (RGA1); CONTAINS InterPro DOMAIN/s: Transcriptional factor DELLA, N-terminal (InterPro:IPR021914), Transcription factor GRAS (InterPro:IPR005202); BEST Arabidopsis thaliana protein match is: GRAS family transcription factor family protein (TAIR:AT1G14920.1); Has 2724 Blast hits to 2666 proteins in 317 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 4; Plants - 2709; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).
Link
InterPro Scan - TAIR