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11-5304-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 19899141 [Map]; Strand: c
      • AT1G53340.1 - [+] show detail - Cysteine/Histidine-rich C1 domain family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 11-5304-1 - 5-prime edge 
    GGGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCTA TGTATATGAA GCCTGGTCAC ACCATAATGT 
    ATAATATGAC GGGTTCCCGC AAACATTATC AGAAGAAGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 25264913 [Map]; Strand: w
      • AT1G67440.1 - [+] show detail - Minichromosome maintenance (MCM2/3/5) family protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 11-5304-1 - 3-prime edge 
    TTNNNNGNAC NTAANCGGNC GNNGTATTTT ACCGACCGTT ACCGACCGTT 
    TTCATCCCTC TGGGAACTAA AGATGGACTT GATGATATTG CGTTTGTTCT 
    GAGAGATC

AT1G53340.1

Model type
Protein coding
Short Description
Cysteine/Histidine-rich C1 domain family protein
Computational Description
Cysteine/Histidine-rich C1 domain family protein; FUNCTIONS IN: zinc ion binding; LOCATED IN: intracellular; EXPRESSED IN: hypocotyl, root, stamen; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: DC1 (InterPro:IPR004146), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, RanBP2-type (InterPro:IPR001876), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: Cysteine/Histidine-rich C1 domain family protein (TAIR:AT2G13900.1); Has 1350 Blast hits to 627 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 1341; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G67440.1

Model type
Protein coding
Short Description
Minichromosome maintenance (MCM2/3/5) family protein
Computational Description
embryo defective 1688 (emb1688); FUNCTIONS IN: GTP binding, GTPase activity; INVOLVED IN: embryo development ending in seed dormancy; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), EngC GTPase (InterPro:IPR010914), GTPase EngC (InterPro:IPR004881); BEST Arabidopsis thaliana protein match is: Minichromosome maintenance (MCM2/3/5) family protein (TAIR:AT1G67460.1); Has 5395 Blast hits to 5393 proteins in 2047 species: Archae - 18; Bacteria - 4575; Metazoa - 3; Fungi - 0; Plants - 65; Viruses - 0; Other Eukaryotes - 734 (source: NCBI BLink).
Link
InterPro Scan - TAIR