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11-5397-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 75705 [Map]; Strand: c
      • AT4G00180.1 - [+] show detail - Plant-specific transcription factor YABBY family protein
        Distance: -321; Region: promoter
      • AT4G00180.2 - [+] show detail - Plant-specific transcription factor YABBY family protein
        Distance: -321; Region: promoter
    Flanking Genome Sequence: 11-5397-1 - 3-prime edge 
    TTTATAACGA CAAGATTTGT GCAGCATCAA ACATGTACAT ACGACAAACA 
    TGCTAACTTT TTTTTTTTTT NTNANCTTTT AAACCCNNTT NTTTTTTGGG 
    GGAAAAANNA AACNTNNATT TGGGCTAAAA NGGGNCGCCC GGNCCCCNNN 
    TTTAAAAAAT NACCCNTTTT TNTGGGGTTA ANTNGGGNNT TTTTTNNANN 
    GNCAANCNNC CAAAANTNAA AANANTTTNA TTNCCCTNNT NAANGNGGNA 
    NTNGTAAGGG NTTTNTTTTN GGGTTNNNCT TTTGGTNNCN GGGNNGGGNC 
    CCTNGGGNCN CCCCANGGNN NANNNGNCNC CNGGGGAAAA AANTTGGNGN 
    AAANNGGANA NGNCAAAACC AAAAANTTTT TGGNANTGGN AAGGGNTTTT 
    TTTTNGGGNA AACCTTTTNG TNNCNGGGNN GGGNNCTTNG GGNCCCCCCC 
    CTTTNGTTTT NCCNTTCCCA AAAAAATTTT CCCCTAAACC CNNNAAATTA 
    ANGGGGGANC ATTNGNAAAT TTTCCTTNNN CNGGNAANAA GAAANAACCA 
    NTTTNAAAAN NGGGGGGGGG GGGTTTNNTA ANCCCTAAAG NCNCNAAACC 
    TGNACCTTNA TGGGGGTTGG GGGGGGGNTC CCCAAAAANN CCTGGGGTTT 
    TTCCCCCCTT TTTANGGTAA AAGGGGCNNN ANNCNNAATT TTNGGNNNNN 
    NNGNCCNATA AC

AT4G00180.1

Model type
Protein coding
Short Description
Plant-specific transcription factor YABBY family protein
Curator Summary
YABBY gene family member, likely has transcription factor activity, involved in specifying abaxial cell fate. Along with FIL, involved in patterning of the fruit. GUS reporter gene expression in seedlings is observed in the young leaves and as the leaf matures, expression is restricted to the abaxial tissues of leaves, expression is also observed on either side of the leaf margin in the younger tissues of leaf blades.
Computational Description
YABBY3 (YAB3); CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), YABBY protein (InterPro:IPR006780); BEST Arabidopsis thaliana protein match is: Plant-specific transcription factor YABBY family protein (TAIR:AT2G45190.1); Has 469 Blast hits to 469 proteins in 131 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 6; Plants - 442; Viruses - 2; Other Eukaryotes - 15 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00180.2

Model type
Protein coding
Short Description
Plant-specific transcription factor YABBY family protein
Curator Summary
YABBY gene family member, likely has transcription factor activity, involved in specifying abaxial cell fate. Along with FIL, involved in patterning of the fruit. GUS reporter gene expression in seedlings is observed in the young leaves and as the leaf matures, expression is restricted to the abaxial tissues of leaves, expression is also observed on either side of the leaf margin in the younger tissues of leaf blades.
Computational Description
YABBY3 (YAB3); FUNCTIONS IN: protein binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: fruit development, abaxial cell fate specification, regulation of transcription; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), YABBY protein (InterPro:IPR006780); BEST Arabidopsis thaliana protein match is: Plant-specific transcription factor YABBY family protein (TAIR:AT2G45190.1); Has 465 Blast hits to 465 proteins in 131 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 6; Plants - 438; Viruses - 2; Other Eukaryotes - 15 (source: NCBI BLink).
Link
InterPro Scan - TAIR