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11-5411-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 286575 [Map]; Strand: w
      • AT4G00700.1 - [+] show detail - C2 calcium/lipid-binding plant phosphoribosyltransferase family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 11-5411-1 - 5-prime edge 
    ATGCTAAGCC CTTTCTTGGC AAAGTTCGAG TCAACGGAAC ATCTTTTGTT 
    CCTCGCTCTG AAGCAGCTCC TTTCAATTAC CCTTTAGAGA AACGCAGTGT 
    TTTCTCTCGA GCCCGTGGAG AACTTTGCTT GAGAGTTTTT ATCACAGACG 
    ACCCTTCTGT TACACCTTCT GTCCCAACCC CGGTTCCAGA ATCTCCTCAA 
    GCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 7086093 [Map]; Strand: c
      • AT4G11780.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 11-5411-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATTCA 
    AATCATTCCC ACGCCGTCAA ACTCCTTCTG CATCTTCCAC CGTTCGTCGT 
    CTTCTTGACG CCGAGATCAA ACGGTCAGGA TTTATCCATC ATCATCATCA 
    TCACACCAAG CAACCACAGT CTCACTAGAA GATCAAGCCA TACAACTTGT 
    GGAACGGCGA TAAGTCACGC CGTTCATAAA GCT

AT4G00700.1

Model type
Protein coding
Short Description
C2 calcium/lipid-binding plant phosphoribosyltransferase family protein
Computational Description
C2 calcium/lipid-binding plant phosphoribosyltransferase family protein; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), Phosphoribosyltransferase C-terminal (InterPro:IPR013583), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (TAIR:AT4G11610.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G11780.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G23020.2); Has 550 Blast hits to 387 proteins in 92 species: Archae - 0; Bacteria - 32; Metazoa - 132; Fungi - 122; Plants - 80; Viruses - 0; Other Eukaryotes - 184 (source: NCBI BLink).
Link
InterPro Scan - TAIR