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11-5412-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Anatomical entity
/structure development stage		 Phenotype
stamen (PO:0009029)
  • abnormal (PATO:0000460)
    (Flowers::stamen)
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)
    (Seed yield::sterile)

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 19614331 [Map]; Strand: c
      • AT5G48390.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
        Distance: 0; Region: exon4 (CDS)
    Flanking Genome Sequence: 11-5412-1 - 5-prime edge 
    GTGNAAACTA ACAAAATCCG GTTATACGAT AACGGTCGGT ACGGGNATTT 
    TCCCATCCTA CTTTCATCTC TGGACTTGCA ACATAAAGTT AAGAGCTTCG 
    GTTTCGCTGC CAATGTCTTG AGTCAATATA GTGACTAAGG TACGGAAGAC 
    CACAACCTCT GTGGTTGGCA TTTTTTTTCC TGAGATATAG AAACTGAGAA 
    ACTTGGAAAG AGAAGCAACA GCAACTGGAA GCGCTTGGCA AGAAATAGCT 
    TCATGCGCTG AAAGGGAAAG ATAATCTGGA GAAAAATCAA GACAGGACGT 
    CATTGCATCG ATCTGACCAA TGGCACAACT GNGTTCCTTC TTTTGCAGGT 
    AGATCTTGAA CTGCAAGAAT CAGAAGCAAA GAGAAGTTGC TGAAACAATT 
    TTTCTCAAAC AATCTCCAGA TACATATATA TGGCGAGGTA GCCGAAGGCC 
    ATATGTTGAA TAAGCATGTA CTGNGGGGGA AAAGACAGTC TACCTTAAGA 
    AAGGAGCANG CAATATTGGG CTCAAGCTGC AAAGACANAN AACTAGTATA 
    TGCAATTCTG AGTTNAAAAG ATCCCAACTA NGACCGTTTG AAANTAGAAT 
    TTCCATGGAT AAAATGTATA CCTTTTCAGG CTTCTTNCTN TGGTATTTCA 
    AGAGCCTCGA TCCANCTGAA NAGAGCCCAA GGTAGGCAAA NACACAAAAC 
    NCTNGAGCCC TNTGGCCCTG AAAACCTCTT TTNTCTNTTA TNATGGGGGA 
    ATNTTGAAGC TNTGGNTTTC TCNANACATN TTATNCACTT TGTNT

AT5G48390.1

Model type
Protein coding
Short Description
Tetratricopeptide repeat (TPR)-like superfamily protein
Curator Summary
Defective in meiotic chromosome segregation. It is involved in crossover formation and involved in both male and female meiosis.
Computational Description
ATZIP4; FUNCTIONS IN: binding; INVOLVED IN: female meiosis, resolution of meiotic recombination intermediates, male meiosis; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Meiosis specific protein SPO22 (InterPro:IPR013940), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR