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11-5412-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Anatomical entity
/structure development stage
Phenotype
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)
    (Seed yield::sterile)

stamen (PO:0009029)
  • abnormal (PATO:0000460)
    (Flowers::stamen)

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 19614331 [Map]; Strand: c
      • AT5G48390.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
        Distance: 0; Region: exon4 (CDS)
    Flanking Genome Sequence: 11-5412-1 - 5-prime edge
    GTGNAAACTA ACAAAATCCG GTTATACGAT AACGGTCGGT ACGGGNATTT 
    TCCCATCCTA CTTTCATCTC TGGACTTGCA ACATAAAGTT AAGAGCTTCG
    GTTTCGCTGC CAATGTCTTG AGTCAATATA GTGACTAAGG TACGGAAGAC
    CACAACCTCT GTGGTTGGCA TTTTTTTTCC TGAGATATAG AAACTGAGAA
    ACTTGGAAAG AGAAGCAACA GCAACTGGAA GCGCTTGGCA AGAAATAGCT
    TCATGCGCTG AAAGGGAAAG ATAATCTGGA GAAAAATCAA GACAGGACGT
    CATTGCATCG ATCTGACCAA TGGCACAACT GNGTTCCTTC TTTTGCAGGT
    AGATCTTGAA CTGCAAGAAT CAGAAGCAAA GAGAAGTTGC TGAAACAATT
    TTTCTCAAAC AATCTCCAGA TACATATATA TGGCGAGGTA GCCGAAGGCC
    ATATGTTGAA TAAGCATGTA CTGNGGGGGA AAAGACAGTC TACCTTAAGA
    AAGGAGCANG CAATATTGGG CTCAAGCTGC AAAGACANAN AACTAGTATA
    TGCAATTCTG AGTTNAAAAG ATCCCAACTA NGACCGTTTG AAANTAGAAT
    TTCCATGGAT AAAATGTATA CCTTTTCAGG CTTCTTNCTN TGGTATTTCA
    AGAGCCTCGA TCCANCTGAA NAGAGCCCAA GGTAGGCAAA NACACAAAAC
    NCTNGAGCCC TNTGGCCCTG AAAACCTCTT TTNTCTNTTA TNATGGGGGA
    ATNTTGAAGC TNTGGNTTTC TCNANACATN TTATNCACTT TGTNT

AT5G48390.1

Model type
Protein coding
Short Description
Tetratricopeptide repeat (TPR)-like superfamily protein
Curator Summary
Defective in meiotic chromosome segregation. It is involved in crossover formation and involved in both male and female meiosis.
Computational Description
ATZIP4; FUNCTIONS IN: binding; INVOLVED IN: female meiosis, resolution of meiotic recombination intermediates, male meiosis; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Meiosis specific protein SPO22 (InterPro:IPR013940), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR