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11-5427-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26495264 [Map]; Strand: w
      • AT5G66310.1 - [+] show detail - ATP binding microtubule motor family protein
        Distance: -3882; Region: intergenic
      • AT5G66320.1 - [+] show detail - GATA transcription factor 5
        Distance: 691; Region: intergenic
    Flanking Genome Sequence: 11-5427-1 - 5-prime edge 
    CTTGTAGTGT TAAAGCAATT AATTAATCTT ACAAATACAA GAGAATTTAA 
    GTGTCAATAA TGAGTTTGAC CAATAAAACA AAAAGATTGA TTTTCTTTGA 
    CTTCAGAATA CATGAAGAGG TTTGATTTAT CTACTAAAAA TCGTCGAGAC 
    TGAAAATTCA TTTACGAAAT TGATGTTACC GAGTCAATGT TAAGTTATAG 
    TCAACCATTT TGGCCGTCAA AGAAGGCCTC TTCCTCAATT AGTCGCGTAT 
    GTTTTAAGCA AAAAACGATG ATTACTAATT TACTATAAAT ATGAAATTAA 
    AAATAAACTT GTACCATTTT GGGTTTGACG CTAGTCAATA AGCAAAATTA 
    AATGATTAGA GGATGAATTT AACGATTCCA TTTATTTTCT TCCATCTGTA 
    TAGACTTAAA GAAATACGTT AAACCAATAT ATACACATAG ATATAAATTT 
    TTTTTGATCA AAACACATAG ATATATAAAA AACTTGTTTT GGTTACAGAA 
    AGTTTCAAAA GTTACTTTAG GTTTCAGTTC AAAACTTAAG AAAGAGACAN 
    GGCCACATGT CGCGTGACCA TGAAACAATA CNTNTNGGNG NCACTTTTAN 
    TTNGGNCCAT TCNTTANNGC NATGGGTTTG TNNCGTTCCT AAAATNAANG 
    CTNTNANCCN NTNNNANNGG NTNNAAATTA ACTCCNTTTT NCCATNGNGT 
    TGG

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26495094 [Map]; Strand: w
      • AT5G66310.1 - [+] show detail - ATP binding microtubule motor family protein
        Distance: -3712; Region: intergenic
      • AT5G66320.1 - [+] show detail - GATA transcription factor 5
        Distance: 861; Region: intergenic
    Flanking Genome Sequence: 11-5427-1 - 3-prime edge 
    ACTACAAGAA CAAAACCTCG TAGTCAATGC GGTATCGTCA ATTGTATTTG 
    TTTCTTGAAA GGCAATATAA TAAAGTTACT ATTGGTCTTA TATATGTATA 
    ACCTTATATT TATTGAGAAA ACACCGACAG TGTCAGATGA TAATTATTGT 
    TTCTACGAAA TTGTNACAAC CTANATTGAG AATTGTACTC ATTAAATAAA 
    TAAACATCGG ATTGGATACT TTTTTGCATT TGTTATATGT AGAATATACT 
    CGTTGACTGT TGGTTGGGAT TAGCACGAGG TGCCATAGCT CGTGTGTAAT 
    GTATAAGACT CTNAACTCGA AATTCAAAAA CTAATAACAG TAAATTTGGA 
    TTTTAAGTGC AACTTTTATG AACTCCACAA ATTATTAACC AAAAACTGGC 
    TAGCAAAAAA AAAAAANCNG ANTNNAANTT NCCCAANTTT TTNGAAAANT 
    TAGGGGGNTT TTTTAANCAA AANTTNANGA ANAANTNANN GNNGNNAAAT 
    TNNAAAANTT ANTCNNGTTT TTNNATNCNA ANAAATTTNT NGCNGTAAAA 
    AAAAANGNCC AAATTNGGAN TCAAATTTNN CCNAANCNTT TTTTGGGACA 
    AANTTGAAAA AATTNGGAGC CCCCCTTTCT TNNNATNAAA CCNANNATAA 
    AATGGCTGGG GGTTNGNTTC CCCAANAATT TTTTGCCTAA AAAGTAAAAC 
    CCCTTTACNC CNGNAANNNA AAAN

AT5G66310.1

Model type
Protein coding
Short Description
ATP binding microtubule motor family protein
Computational Description
ATP binding microtubule motor family protein; FUNCTIONS IN: microtubule motor activity, ATP binding; INVOLVED IN: microtubule-based movement; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3490 (InterPro:IPR021881), Kinesin, motor region, conserved site (InterPro:IPR019821), Kinesin, motor domain (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: ATP binding microtubule motor family protein (TAIR:AT3G51150.2); Has 12086 Blast hits to 11258 proteins in 438 species: Archae - 14; Bacteria - 210; Metazoa - 5156; Fungi - 1590; Plants - 1989; Viruses - 17; Other Eukaryotes - 3110 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G66320.1

Model type
Protein coding
Short Description
GATA transcription factor 5
Curator Summary
Encodes GATA transcription factor gene GNC, involved in regulating carbon and nitrogen metabolism. Expression occurs in aerial tissue at an early stage of development and is inducible by nitrate.
Computational Description
GATA transcription factor 5 (GATA5); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, NHR/GATA-type (InterPro:IPR013088), Transcription factor, GATA, plant (InterPro:IPR016679), Zinc finger, GATA-type (InterPro:IPR000679); BEST Arabidopsis thaliana protein match is: GATA transcription factor 6 (TAIR:AT3G51080.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR