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11-5430-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 1261680 [Map]; Strand: c
      • AT1G04590.1 - [+] show detail - BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) su...
        Distance: -254; Region: promoter
      • AT1G04590.2 - [+] show detail - BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) su...
        Distance: -255; Region: promoter
      • AT1G04600.1 - [+] show detail - myosin XI A
        Distance: -443; Region: promoter
    Flanking Genome Sequence: 11-5430-1 - 5-prime edge 
    GTTGGAACTT GGAAAGCGAA CGAAGAAGAA TCATGAAACT TTGTAATTCC 
    GATGTTACCC CTTTTCATTA AACCGATCCG GTTTATCTAT CTCGCTTTCA 
    ACGGATCTAA TAGAAAAGAG AGAAGCGTCT TTCTCGTTAA TGGGCCAATT 
    CTTTTCTTAA TGGGCTACAC GTTTTATCAT CTCTATTTCA ACGGATCCTT 
    AACNTAACCT ACCATTAGGA AGAAAGAAAG CCTTACCCAG NCCCNGGGNC 
    CGTCNNACCC CCCCTGGCCC CTTTAAA

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 1261796 [Map]; Strand: c
      • AT1G04590.1 - [+] show detail - BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) su...
        Distance: -370; Region: promoter
      • AT1G04590.2 - [+] show detail - BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) su...
        Distance: -371; Region: promoter
      • AT1G04600.1 - [+] show detail - myosin XI A
        Distance: -327; Region: promoter
    Flanking Genome Sequence: 11-5430-1 - 3-prime edge 
    GTTCCAACGT CCGTTTTGGG GGGAAATAAA CCAGGAGACA AGAAAATCCG 
    AGAAAAAAAA AATTCAGGTT TCTGCNAAAA AATCTGTAAA TGAAACANAC 
    CTNTGTGTTC TGGGATTTTT TTTCAAAGGG AAAAAANCTC ANGGGTTTAA 
    AATCCTNTGC ANTCGTCNCA AANTTTTGCA AATGTACCCT NTTTTATGTT 
    TCTNTGTTGT NGNCGTCNAT CAAAAAGTTT TNAACCTGGG AAAGNGAAAT 
    TTTGGTTCTT GATTTTNTCA TGGATC

AT1G04590.1

Model type
Protein coding
Computational Description
BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT4G21190.1); Has 111 Blast hits to 111 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 109; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G04590.2

Model type
Protein coding
Computational Description
BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT4G18975.4); Has 111 Blast hits to 111 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 109; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G04600.1

Model type
Protein coding
Short Description
myosin XI A
Curator Summary
member of Myosin-like proteins
Computational Description
myosin XI A (XIA); FUNCTIONS IN: motor activity; INVOLVED IN: actin filament-based movement; LOCATED IN: myosin complex; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Dil domain (InterPro:IPR018444), Dilute (InterPro:IPR002710), Prefoldin (InterPro:IPR009053), Myosin, N-terminal, SH3-like (InterPro:IPR004009), Myosin head, motor domain (InterPro:IPR001609), IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: myosin XI D (TAIR:AT2G33240.1); Has 140144 Blast hits to 79260 proteins in 3527 species: Archae - 2295; Bacteria - 25176; Metazoa - 58445; Fungi - 12073; Plants - 6566; Viruses - 744; Other Eukaryotes - 34845 (source: NCBI BLink).
Link
InterPro Scan - TAIR