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11-5438-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 1245637 [Map]; Strand: c
      • AT1G04560.1 - [+] show detail - AWPM-19-like family protein
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: 11-5438-1 - 5-prime edge 
    GGGANAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCCT ACTCCTATGT TTATTTGCTT GCATGCCAAC 
    CTTTACCAAA ATTAAATTCA ATATTACCAT TTACCATATA TATATAAAGA 
    AGTTAACAAA ATATCCAAAC CAAGTTTAGT CGTCAAAATT AGCACTTCGT 
    GAGAAGTAGC TAGTAGGACA TCATAAATAG AATAATTACC CCATGGCAAG 
    AGCTGTGATG GCCCATGCAA CGATGGAAGA AGCTCCGGCA GCGGCTAAAC 
    TATCATTCCT CCAAAACCTA ATATGATTTG CTCCGGCCAA CTTCGACGCT 
    ACTCCTACCA CAGCCGCCAA TATCGAAAAC GTCAAGAAGA ACGGTGTTGC 
    TCCATTGCCT CCAAAACCTA TTCAAACATT ACTAATTAAT ATTCTTAGTA 
    ATTCCATTAA ATCAGCTACA TGATCATATA TATAGCTATA GAGATAAGAG 
    AAAAAGAAAT TTACTTGGGT GGTTAGTTTG GCCGTTGATG TATTTATTGA 
    GACACCAACT TGCGAAACCA AGCACAATCA GGTACATAAC AAGATTCAAG 
    AACAGCAATG GTGCTGCTAT GTTTCTTCCC ACTGTCGTCG CCATCAATTT 
    CTTCTTTTAC CTTCTCCTAA AGATCTAGTT TTACTCTTTT GCTACTNAAA 
    ACCTTTCTTC TCTATGCAAT TCAACACTTA AACTAGTTGC TCGGGGATGA 
    TCTTTCTATT GG

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 1245657 [Map]; Strand: c
      • AT1G04560.1 - [+] show detail - AWPM-19-like family protein
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: 11-5438-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    TGCATAGGAG GATGGAGAGG ATGGAGATTG AAGATGATTG AAGCCTTCAT 
    TATCATTTTG ACGTTCACGC AACTTCTCTA CCTCATGTTG ATCCATGCCG 
    GTTCACTCAG CAGCAAATAT GGTCCTGGCT ACAGAGACCA AGACTATGCT 
    ACAGGCCAAG CTCATGGTCA TGGTCATGTA CCACACACTG TGGGAGAGCA 
    CAAGGCTGGT GTTGGATCTA CCATG

AT1G04560.1

Model type
Protein coding
Short Description
AWPM-19-like family protein
Computational Description
AWPM-19-like family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: AWPM-19-like (InterPro:IPR008390); BEST Arabidopsis thaliana protein match is: AWPM-19-like family protein (TAIR:AT5G46530.1); Has 177 Blast hits to 177 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 177; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR