1. Home
  2. Mutant Lines
  3. 11-5460-1

11-5460-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 8936642 [Map]; Strand: w
      • AT2G20740.1 - [+] show detail - Tetraspanin family protein
        Distance: 0; Region: intron2 (CDS)
      • AT2G20740.2 - [+] show detail - Tetraspanin family protein
        Distance: 0; Region: intron3 (CDS)
      • AT2G20740.3 - [+] show detail - Tetraspanin family protein
        Distance: -36; Region: promoter
    Flanking Genome Sequence: 11-5460-1 - 5-prime edge 
    ACTCTATTGA TGAATTGTAG CATCACTACG TTAGCCTGTT TTTCTTTGGT 
    AGTTTCATCA TTCCTTCCTG AATT

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 8936526 [Map]; Strand: w
      • AT2G20740.1 - [+] show detail - Tetraspanin family protein
        Distance: 0; Region: exon2 (CDS)
      • AT2G20740.2 - [+] show detail - Tetraspanin family protein
        Distance: 0; Region: exon3 (CDS)
      • AT2G20740.3 - [+] show detail - Tetraspanin family protein
        Distance: -152; Region: promoter
    Flanking Genome Sequence: 11-5460-1 - 3-prime edge 
    AATAGAGTTG CAGGAACAAC TTATAAAAAA AACAGAAGTT TACCAAGTAA 
    AGGCAACATC CATTCACGGT TTCAGCAGCT ATGTGCCCGG CACAAGTGAC 
    AACACAGAGA ATGGCCCCGA GACCAAGAAA TGAATAAATG AACCTGAAGC 
    TCATAAGAAG ATTGGTTCAG AAATTTTCAT CAGCAATGGC ATACTTCATA 
    TTTCATAACA ATGATAACTT CCCCCTCACA CAAAAACAAG ATATGCCACT 
    TTCCAGTGCC ATCTTACAAG AATCCTGAAG CTATCTCTTC CATAGCCTAA 
    CTACTTCTAG ACACCTCAAG CT

AT2G20740.1

Model type
Protein coding
Short Description
Tetraspanin family protein
Computational Description
Tetraspanin family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Tetraspanin (InterPro:IPR018499); BEST Arabidopsis thaliana protein match is: Tetraspanin family protein (TAIR:AT2G20230.1); Has 160 Blast hits to 160 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 159; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G20740.2

Model type
Protein coding
Short Description
Tetraspanin family protein
Computational Description
Tetraspanin family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Tetraspanin (InterPro:IPR018499); BEST Arabidopsis thaliana protein match is: Tetraspanin family protein (TAIR:AT2G20230.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G20740.3

Model type
Protein coding
Short Description
Tetraspanin family protein
Computational Description
Tetraspanin family protein; BEST Arabidopsis thaliana protein match is: Tetraspanin family protein (TAIR:AT2G20230.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR