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Mutant Lines
11-5475-1

11-5475-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

5 prime edge [+] show sequence
1. Chromosome: 1; Position: 1012018 [Map]; Strand: w
  - AT1G03940.1 - [+] show detail - HXXXD-type acyl-transferase family protein
    Distance: -962; Region: promoter
  - AT1G03950.1 - [+] show detail - vacuolar protein sorting-associated protein 2.3
    Distance: 0; Region: intron6 (CDS)
Flanking Genome Sequence: 11-5475-1 - 5-prime edge
```
TGTCCATTTG TGCAGACTGC TTTTGAAATT CTCTCATAAC CTTAGCCTGT 
TTTGCTGGAT C
```

3 prime edge [+] show sequence

Chromosome: 1; Position: 1011902 [Map]; Strand: w
- AT1G03940.1 - [+] show detail - HXXXD-type acyl-transferase family protein
  Distance: -846; Region: promoter
- AT1G03950.1 - [+] show detail - vacuolar protein sorting-associated protein 2.3
  Distance: 0; Region: intron7 (CDS)

AATGGACATG ACTGTAAGTT CTTTCAAATC CATCGTTTCT TTAAATCCAT 
GAACACTCAA ATAGTCATTA ATCTGACTAA TGCATGTGGT ATCCAGACTG 
AGATGATGTC AGATTCCATA GATGATGCTT TAGACAATGA CGAAGCTGAA 
GACGAAACAG AGGATTTGAC AAACCAGGTA CATTTCCGGG CTCTATCCAT 
CAATTCAATT TCTAAAAATA GACTGTTTCA AAGGGTGAAC AAATGCTTTT 
TGTTTTACTG ATTAGGTTCT TGATGAAATC GGCATTGATA TCGCCTCGCA 
GGTTTGTTTT TAACCATCGA TTCTTGTCAT TGTTTCCGTA TAATCACGTT 
TTCTCCGTGA TCCATATTCG CTTGTCTCTG TATTTATCCA TGTGCAGTTA 
TCATCTGCTC CAAAAGGTAA AATTGGTGGG AAGAAAGCAG AGGATGTTGG 
CAGGTATTGT ATCCACTAAA CACATCTAGA ACATATCTGT ATCGAAATCA 
AACCTCGATG TTTTTGTGCA GTTCTGGAAT CGATGAACTG GAGAAGCGGT 
TGGCGGCGCT TANATAGAAA GAACAAGTAC CATGAGATTG AAGATGTTTC 
AGACAAAAAA TATTATACAT TCAATGTGTC TTCTACAGTT TGCTTTCTGG 
GAAGATTTGT GGATNTATAT ATAATAAACA ATATTTAATG GGCCTAATAA 
ACTACCAAAG C

AT1G03940.1

Model type: Protein coding
Short Description: HXXXD-type acyl-transferase family protein
Computational Description: HXXXD-type acyl-transferase family protein; FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Transferase (InterPro:IPR003480); BEST Arabidopsis thaliana protein match is: HXXXD-type acyl-transferase family protein (TAIR:AT1G03495.1); Has 1873 Blast hits to 1858 proteins in 109 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 18; Plants - 1853; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G03950.1

Model type: Protein coding
Short Description: vacuolar protein sorting-associated protein 2.3
Computational Description: vacuolar protein sorting-associated protein 2.3 (VPS2.3); CONTAINS InterPro DOMAIN/s: Snf7 (InterPro:IPR005024); BEST Arabidopsis thaliana protein match is: SNF7 family protein (TAIR:AT5G44560.1); Has 1693 Blast hits to 1691 proteins in 237 species: Archae - 2; Bacteria - 12; Metazoa - 754; Fungi - 334; Plants - 366; Viruses - 0; Other Eukaryotes - 225 (source: NCBI BLink).
Link: InterPro Scan - TAIR