1. Home
  2. Mutant Lines
  3. 11-5478-1

11-5478-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 1982134 [Map]; Strand: w
      • AT3G06455.1 - [+] show detail - ubiquitin family protein
        Distance: 0; Region: exon2 (3UTR)
      • AT3G06460.1 - [+] show detail - GNS1/SUR4 membrane protein family
        Distance: -525; Region: promoter
    Flanking Genome Sequence: 11-5478-1 - 5-prime edge 
    GGGANAAAAC TAACAAAATC GGTTATACGA TAACGGTCGG TACGGGATTT 
    TCCCATCCTA CAAGCCATTA TGTAAATAAG AAATGTGTGT TAGATGACAA 
    GGCCTAGGAG TTCAAATGTT TCAGTTATCT TTGGTTAAGT CCCTACCGAA 
    ATGGGTTCTA AGCCCAAATG TTTTAAAAAC CTATAGCCTT ATTTGAAAAA 
    ACGACAATTT TCAGTCACCA AGCCTAAACT TCCTCTTATT AAAGACAAGT 
    TTTTCTCCTT TTAAAAC

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 1982125 [Map]; Strand: w
      • AT3G06455.1 - [+] show detail - ubiquitin family protein
        Distance: 0; Region: exon2 (3UTR)
      • AT3G06460.1 - [+] show detail - GNS1/SUR4 membrane protein family
        Distance: -534; Region: promoter
    Flanking Genome Sequence: 11-5478-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCAA 
    AGTTGTATGA TTTGAACTAC AAGCCAAAAA ACTTCAAAAG GGTGTAATCT 
    TTTTGAAGAT GGATGTTGGT CTTCATTTCT TGGCCAGTAA TTTCTTCGGG 
    AGCTTATCGA GGGGCGTTGA TTTAAGTAAA AATAGCCTCG CAGCTCGCTC 
    TCGCAATGTC CCTCTGCATT TCAGACCGCG TGACTGAAGC TCAGTCTTCA 
    ATCTCTCCAT CCCCAAAACC TCCATATCTG TGGCTGCTTT GAACTCAGCA 
    AAGTTAAGCG GTTCAACAGG TTTGCAACAC ACTCTTTCTT TCGCAGTTCC 
    TCCTCTCTTT ACGACAAAAT CATCGTTTCC ACTTGATTTC TCCACCTTTT 
    CAAGTTGATC CATTGCATCA GCAACAGCAA AATCATCCAT CTTCTCTTCG 
    TTAATTCTTT GAACAACCGT GATCTCTCCC TTAACTACAT CTGAACTTTG 
    GTGCACTACA AAGTCGTTCT CACCATCATG GGATC

AT3G06455.1

Model type
Protein coding
Short Description
ubiquitin family protein
Computational Description
ubiquitin family protein; CONTAINS InterPro DOMAIN/s: Ubiquitin (InterPro:IPR000626); BEST Arabidopsis thaliana protein match is: Ubiquitin-like superfamily protein (TAIR:AT4G01000.1); Has 8324 Blast hits to 4012 proteins in 617 species: Archae - 0; Bacteria - 0; Metazoa - 3789; Fungi - 883; Plants - 2106; Viruses - 164; Other Eukaryotes - 1382 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G06460.1

Model type
Protein coding
Short Description
GNS1/SUR4 membrane protein family
Computational Description
GNS1/SUR4 membrane protein family; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: GNS1/SUR4 membrane protein (InterPro:IPR002076); BEST Arabidopsis thaliana protein match is: GNS1/SUR4 membrane protein family (TAIR:AT3G06470.1); Has 2223 Blast hits to 2217 proteins in 255 species: Archae - 0; Bacteria - 0; Metazoa - 1419; Fungi - 367; Plants - 108; Viruses - 14; Other Eukaryotes - 315 (source: NCBI BLink).
Link
InterPro Scan - TAIR