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Mutant Lines
11-5486-1

11-5486-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 1; Position: 29639411 [Map]; Strand: w
- AT1G78830.1 - [+] show detail - Curculin-like (mannose-binding) lectin family protein
  Distance: -859; Region: promoter
- AT1G78840.1 - [+] show detail - F-box/RNI-like/FBD-like domains-containing protein
  Distance: 0; Region: exon4 (CDS)

GGGANAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
CCCATCCTAC TTTCATCAAG CTCCTTGAGA ACTGCTGCAT TCCCAGGATG 
TATTTCACAA GCTCGGTTTC GACCTGATTC TCAACCGAGC TGGATATCAT 
ATCTGTGCTG TATATCGTAA CAAACTTGAG CGATGTTAGC AGACACTTAG 
GCATAGTTGA TCTTGAGATA TCCAATATAT CTAGACGATG ATCGTGAACC 
CACTACATAA TATCAAGGAC AAGAAACGAA AAACGTAATG AGAATGTATA 
GTTTAGTTAA GTAATTCAAG AGTTACTTAT AAAAATAAAA TTACCAACTC 
TAGAGATTTT AGGTTTGGAC AGCTTGCGAG AAACGTTGGT AACAACTTTA 
AACAAGAGGA ATCCATAGAA ACTTCCAAAT GGGTTAAGTT AGAGAACTGA 
GGCAATGGTT CCGAGCTAGA GTAAGCATAC ATAGCCTAGC AAAAACCAAG 
AAGAATAAAT TAGTAATAAG TTTTCGAGAC AGATTAATTC AGGATGAATA 
GTTACAAAAA TATACATACC TCTAGACAAC GGTAATTGAG TGCAAGATTT 
GTGACATTTG ATATCCAAGC AATAAATGTA CGCAATGTTT TCATCGTCAA 
TGAGTTAATA GGATTAAACT CTCCTTCAGA GATACTAATA TCCACTTTGA 
GCGGAGAACA TACACTATTC ANCACAAGGN CTTTAAACCG GTGGATTTGA 
AGATTCAGAA ACTTAAGCCT A

3 prime edge [+] show sequence
1. Chromosome: 1; Position: 29639360 [Map]; Strand: w
  - AT1G78830.1 - [+] show detail - Curculin-like (mannose-binding) lectin family protein
    Distance: -808; Region: promoter
  - AT1G78840.1 - [+] show detail - F-box/RNI-like/FBD-like domains-containing protein
    Distance: 0; Region: exon4 (CDS)
Flanking Genome Sequence: 11-5486-1 - 3-prime edge
```
GAGCTTACTC TTCGATTCAT TTTATGGGCA GAAGAAGACA GGTTTCAACT 
TAGCAAGCAA ATCCTTGCGT TTCCAAAGCT
```

AT1G78830.1

Model type: Protein coding
Short Description: Curculin-like (mannose-binding) lectin family protein
Computational Description: Curculin-like (mannose-binding) lectin family protein; FUNCTIONS IN: sugar binding; LOCATED IN: apoplast, cell wall, plasma membrane, plant-type cell wall; EXPRESSED IN: leaf; CONTAINS InterPro DOMAIN/s: Curculin-like (mannose-binding) lectin (InterPro:IPR001480), PAN-2 domain (InterPro:IPR013227); BEST Arabidopsis thaliana protein match is: D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (TAIR:AT1G78820.1); Has 2662 Blast hits to 2603 proteins in 85 species: Archae - 0; Bacteria - 10; Metazoa - 0; Fungi - 0; Plants - 2651; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G78840.1

Model type: Protein coding
Short Description: F-box/RNI-like/FBD-like domains-containing protein
Computational Description: F-box/RNI-like/FBD-like domains-containing protein; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box/RNI-like/FBD-like domains-containing protein (TAIR:AT5G22670.1); Has 1766 Blast hits to 1735 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1762; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
Link: InterPro Scan - TAIR