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11-5530-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 12729229 [Map]; Strand: c
      • AT4G24670.1 - [+] show detail - tryptophan aminotransferase related 2
        Distance: 0; Region: exon2 (CDS)
      • AT4G24670.2 - [+] show detail - tryptophan aminotransferase related 2
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: 11-5530-1 - 5-prime edge
    TTGAGATATT GGCAGGAAAA TGGAGAGGTG ACAACAATGG TGATACCTGG 
    ATGGCAATCT CTTAGCTATT TTTCAGATGA AAACAACCTC TGTTGGTTTC
    TTGAGCCAGA GCTTGCCAAA GAGATTGTGA GGGTGCATAA GGTTGTTGGG
    AATGCTGTAA CGCAAGACCG CTTCATTGTT GTTGGCACTG GCTCAACACA
    ATTGTATCAG GCTGCTCTCT ATGCTCTCTC CCCACATGAT GACTCCGGTC
    CCATTAATGT CGTGTCAGCC GCACCCTATT ATAGTGTGAG TCATATTTAT
    AGCCATCTCA AAACTATCTG TTGATTCTGT ACTACAATTC GGTGGAGGAA
    CTTTAGGCCA CCCTTGGGGA AATGCACCGG GTGCCGTAGC CAACCGAGTA
    GCTCTGGAAG CATGTGTACA AGCTCGTAAT GAGGGACGTG ATCTTGCAGT
    CGAGGGTAAT GAAATTATCC GTGAAGCT
  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 12729281 [Map]; Strand: c
      • AT4G24670.1 - [+] show detail - tryptophan aminotransferase related 2
        Distance: 0; Region: exon2 (CDS)
      • AT4G24670.2 - [+] show detail - tryptophan aminotransferase related 2
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: 11-5530-1 - 3-prime edge
    AAANNNNNNT TAAANAAANG AAACGGTNGN AGTATTTTAC CGACCGTTAC 
    CGACCGTTTT CATCCCTCTC TCATACACCG TTGGATCACC ACTGCATAGA
    GATATACACA TCAAGATTAG CATATATATA CATTCTACCG TGTGACAGGA
    GTTAATCTTT GAGTCAACGA GAGCTGAGCA TAGAGGTAAA GAATTAGTGG
    GTCCTTTTAT TTAATGGAGA ACATAAAACA TCACCTTCTT ATTTCTGCAA
    CAGTGAAAAA CATGGTCAAG TACTAGATCA CCAGACTAGT CCTTTAGATT
    CCCTCAAAGG ACATGAAATA TTTATGTATT CAGAATCATG TCACCACAAT
    GTGGGCTCTC TTTACTATTC CCTATTTAAA AGTTTTTCCT TGACAATGGA
    ATTGGAAAGA ATCAAAAGAG TTTTATATTC TGATGTACCA AGTGTCTCCT
    CAACCTAAAT TTTTCAAACT TGAAACCCAT TGGCTATCAC TACACTAGAT
    TAATTGCGAG CATCCAAAAA GAAACATCAC TCACTACCAT CCTTTCCTCT
    AACATACCAA ATCCTTATTA TAAAAAAAAA GTCACTCTCT TCTTTACTTT
    CATTAACAAG AANAATGGCC CATTTCCAAT TTAAGTTTTA ATACTTAACA
    GTTGACATTT ATGACAAATA TATCTAAATT CCCTAAAAAG AAAACAAATG
    GACCACCATG ATCAATTTGC AAAGTTTTTT TGNGTGTTNG ATGAGTCATA
    AGACTCATAN CAAAGTAAAT AACAGAACCA ATTTTCAAAC TNGCGGGGCA
    CGTT

AT4G24670.1

Model type
Protein coding
Short Description
tryptophan aminotransferase related 2
Curator Summary
Encodes a protein with similarity to the TAA1 trytophan aminotransferase involved in IAA biosynthesis. Double mutant analyses suggest that this protein is involved in regulating many aspects of plant growth and development from embryogenesis to flower formation and plays a role in ethylene-mediated signaling.
Computational Description
tryptophan aminotransferase related 2 (TAR2); FUNCTIONS IN: L-tryptophan:2-oxoglutarate aminotransferase activity, carbon-sulfur lyase activity, L-tryptophan:pyruvate aminotransferase activity; INVOLVED IN: in 12 processes; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421), Allinase, C-terminal (InterPro:IPR006948); BEST Arabidopsis thaliana protein match is: tryptophan aminotransferase related 1 (TAIR:AT1G23320.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G24670.2

Model type
Protein coding
Short Description
tryptophan aminotransferase related 2
Curator Summary
Encodes a protein with similarity to the TAA1 trytophan aminotransferase involved in IAA biosynthesis. Double mutant analyses suggest that this protein is involved in regulating many aspects of plant growth and development from embryogenesis to flower formation and plays a role in ethylene-mediated signaling.
Computational Description
tryptophan aminotransferase related 2 (TAR2); FUNCTIONS IN: L-tryptophan:2-oxoglutarate aminotransferase activity, carbon-sulfur lyase activity, L-tryptophan:pyruvate aminotransferase activity; INVOLVED IN: in 12 processes; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421), Allinase, C-terminal (InterPro:IPR006948); BEST Arabidopsis thaliana protein match is: tryptophan aminotransferase related 1 (TAIR:AT1G23320.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR