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11-5542-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 8017009 [Map]; Strand: w
      • AT1G22660.1 - [+] show detail - Polynucleotide adenylyltransferase family protein
        Distance: -388; Region: promoter
      • AT1G22660.2 - [+] show detail - Polynucleotide adenylyltransferase family protein
        Distance: -388; Region: promoter
    Flanking Genome Sequence: 11-5542-1 - 5-prime edge 
    ACCATGAAGT TCGGAGCCGG TACTCGTATC TCCCTGAGTC GGGATGTGTT 
    TTAATTTGTG CTAATACAAA TTTGTGTTGT AGTCTCTCTT TGTACAGTAC 
    AGGGTGATCG CTACTTTTGT TGGTATATAC ATGATCTAAC GCATGCGTGT 
    ACATCTATTT AAAGACCTAT ACATAGTTTC GTAGGTTTCA CGTAAAGTCT 
    TCAATGGTTG AACTAAATAG TGTTACTCAT AATCACCTAT CCATTTGCAC 
    CAGATGAAAG AGACGTATTC ATTTTCTTTT TCCGCTTAAA ATTATATATT 
    GAATTGATCT AAATAACCGA TTCACCAATT GTATATCTTA GTAGCGGAAA 
    TTGGGCCACT ATTGGGCCTA ATAACCATTC TAACTTTTAC GGATC

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 8016935 [Map]; Strand: w
      • AT1G22650.1 - [+] show detail - Plant neutral invertase family protein
        Distance: -944; Region: promoter
      • AT1G22660.1 - [+] show detail - Polynucleotide adenylyltransferase family protein
        Distance: -462; Region: promoter
      • AT1G22660.2 - [+] show detail - Polynucleotide adenylyltransferase family protein
        Distance: -462; Region: promoter
    Flanking Genome Sequence: 11-5542-1 - 3-prime edge 
    ATTGAAAACG GTAGAGGTAT TTTACCGACC GTTACCGACC GTTTTTAGGT 
    TGTCAAAAAA AACAAACAAA CAGGTAAAGG CATTGTACCT AAATGCAAAA 
    AGTCAATTTA CAGCTAGCTA AGTTCAGTTC CCATCAACTA TAAGACCTGA 
    CTTGAAAGCA AAACACAATC CTGGATTTAA CATCGTCCAC GTGAACCGCA 
    TGCACNTGAC AATGGTTTCT ATTTATTTTC TAAATCCACG TTATATCTGA 
    TTTGATGGTA ATGTACACAT CAACTTGCCA TGAAAACGTA ATTTCTAATC 
    CTCGAATATT TCAATTATGC AATGATCAAC TACTAATTAT GATTGATTTT 
    CAAGATAGCT TAAACCACTT TCTTTTACAA ATTTTTTTTT TTNAAAAAAG 
    CT

AT1G22650.1

Model type
Protein coding
Short Description
Plant neutral invertase family protein
Computational Description
Plant neutral invertase family protein; FUNCTIONS IN: catalytic activity, beta-fructofuranosidase activity; INVOLVED IN: sucrose catabolic process, using beta-fructofuranosidase; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Plant neutral invertase (InterPro:IPR006937), Six-hairpin glycosidase-like (InterPro:IPR008928); BEST Arabidopsis thaliana protein match is: cytosolic invertase 2 (TAIR:AT4G09510.1); Has 703 Blast hits to 700 proteins in 102 species: Archae - 0; Bacteria - 140; Metazoa - 0; Fungi - 0; Plants - 316; Viruses - 0; Other Eukaryotes - 247 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G22660.1

Model type
Protein coding
Short Description
Polynucleotide adenylyltransferase family protein
Computational Description
Polynucleotide adenylyltransferase family protein; FUNCTIONS IN: tRNA adenylyltransferase activity, RNA binding, nucleotidyltransferase activity; INVOLVED IN: tRNA processing, RNA processing; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Poly A polymerase, head domain (InterPro:IPR002646); BEST Arabidopsis thaliana protein match is: Polynucleotide adenylyltransferase family protein (TAIR:AT2G17580.1); Has 8643 Blast hits to 8635 proteins in 2546 species: Archae - 2; Bacteria - 6091; Metazoa - 128; Fungi - 234; Plants - 120; Viruses - 8; Other Eukaryotes - 2060 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G22660.2

Model type
Protein coding
Short Description
Polynucleotide adenylyltransferase family protein
Computational Description
Polynucleotide adenylyltransferase family protein; FUNCTIONS IN: tRNA adenylyltransferase activity, RNA binding, nucleotidyltransferase activity; INVOLVED IN: tRNA processing, RNA processing; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Poly A polymerase, head domain (InterPro:IPR002646); BEST Arabidopsis thaliana protein match is: Polynucleotide adenylyltransferase family protein (TAIR:AT2G17580.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR