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11-5566-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30035884 [Map]; Strand: w
      • AT1G79830.2 - [+] show detail - golgin candidate 5
        Distance: -2090; Region: intergenic
      • AT1G79840.2 - [+] show detail - HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START ...
        Distance: -1072; Region: intergenic
    Flanking Genome Sequence: 11-5566-1 - 5-prime edge 
    GTTGGAGGCA AACCCATAAA GAGCATTCAT TTCCTTTTAA GGTCGCTGAA 
    ATTAATGAGT AACGATCGGT CAATGCCTCT CGCTGACCTT TTTTTTTTTT 
    TNNANNNNNA AAAAAAAAAA AAAAAANTTN NAANGTTTTT TNCCNNNGGN 
    AAANAANNTT NGGNAAANAA ATTTTNTTNG TTAACNANCG TTTTNAAAAN 
    TTTTTTTNNC CAAATAACNA CCCGGGNCCG GNANCCCCCN GGGCCCTNAA 
    AAA

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30035750 [Map]; Strand: w
      • AT1G79830.2 - [+] show detail - golgin candidate 5
        Distance: -1956; Region: intergenic
      • AT1G79840.2 - [+] show detail - HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START ...
        Distance: -1206; Region: intergenic
    Flanking Genome Sequence: 11-5566-1 - 3-prime edge 
    CCTCCAACCC CTTTCCAATT CCTCCACCCT CTCTTTATTA TACAGCATCT 
    CCCTCTCTCT CTATATCCAC CATATATACA TTTTATAATG CCACCTGGAC 
    ACATGTGTAT GTGTATGTTG TTTTAATATT TGACAAAATT TGAAATTTTG 
    ATCATCTTAT TGTATCACGG GCACGTCAAG ATTTCAAACA TTGATTCATA 
    TTATCGTATG CATACACCAT GACATATTAT TGCAAGATAT ATCTCAACAG 
    TTACATTGTT AACAATATAG ATATAGTAGC TTAAACCGTC CGTATAATAC 
    GTACGTAAAT GGACGAAGAC GTATAGTGAA GGAAACTTAG GTCTTTAAAT 
    ATATAATGGT ATAACTGTAG CAGATGATTT ATCTACAATT CAAAAGCT

AT1G79830.2

Model type
Protein coding
Short Description
golgin candidate 5
Curator Summary
This gene is predicted to encode a protein that functions as a Golgi apparatus structural component known as a golgin in mammals and yeast. A fluorescently-tagged version of GC5 co-localizes with Golgi markers, and this localization appears to be replicated using the C-terminal (139 aa) portion of the protein. The C-terminal portion of the protein can also specifically interact with two members of the Rab family of GTPases (RabH1b and RabH1c).
Computational Description
golgin candidate 5 (GC5); FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: Golgi apparatus, cytoplasm; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: TATA element modulatory factor 1 DNA binding (InterPro:IPR022092), TATA element modulatory factor 1 TATA binding (InterPro:IPR022091); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G79840.2

Model type
Protein coding
Short Description
HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START domain
Curator Summary
Glabra 2, a homeodomain protein affects epidermal cell identity including trichomes, root hairs, and seed coat. It also down-regulates seed oil content. Expressed in atrichoblasts and required to suppress root hair development. Also expressed abundantly during early seed development. Directly regulated by WER.
Computational Description
GLABRA 2 (GL2); CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Lipid-binding START (InterPro:IPR002913), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: protodermal factor 2 (TAIR:AT4G04890.1).
Link
InterPro Scan - TAIR