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11-5576-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 10714304 [Map]; Strand: c
      • AT4G19700.1 - [+] show detail - SBP (S-ribonuclease binding protein) family protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 11-5576-1 - 5-prime edge 
    ACTTCAACAA AGCAGAAAGT GGTCTCAGTT ACAATTTCAC TGTTCCTCCT 
    CTGTCTACAA AACGCCAGCG AGATTTTCAA TTCTCAGACT CAAACGCTCC 
    GGTTAAACGG AGGTCCGTAG CAGTTTGACT CATCATCACC GTCGTTGATA 
    AACATTGAAC TCGTATCTCA GATTCAAAAC CAACAACAGT CAGAGATCGA 
    TAGGTTCGTA GCTCAGCAAA CGGAGAAGCT AAGAATAGAG ATTGAAGCAA 
    GGCAACAAAC GCAAACGCGG ATGTTAGCGT CTGCGGTTCA AAACGTTATA 
    GCCAAGAAAC TAANAGAGAA AGACGACGAA ATCGTACGGA TTCGAAACCT 
    AAACTGGGTT TTACAAGAGA GGGTGAAGAG TCTTTACGTC GAAAATCAGA 
    TTNGGCGTGA TATCGCTCAN ACCGNCGANN CAAACGCTAN TACTCTNNGA 
    NCAAACCTAG ACCAAGTTCT TGCTCAACNN GAAACAGNNN GCNAACCACT 
    TNNANCCGTG TGNNGAAGAC CGATGCGGAA TCCATGTGNN NGGAANTTTG 
    TNGNNANTAG ANGGGGGGTG GNTGAATNNC GGNANCGGGN AGNNTNGAGG 
    GGNGGTTGTT AANCCNGGGC NGGCGTGGAG AGANNCCANN TGCGTTCGGA 
    GGGGACTCCT TGNANNNAGN GCTCNNNTTN GNTNATCNGT CTNGCNGGNG 
    GTTNGGCCNT NGNANCNNNN NNTNNNNGAC NNNAATANG

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 10714420 [Map]; Strand: c
      • AT4G19700.1 - [+] show detail - SBP (S-ribonuclease binding protein) family protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 11-5576-1 - 3-prime edge 
    GTTGAAGTTG GCTTTCGCAG CTAAAGGCTC AACGGCGAAA GATTCTCCGG 
    TTATTAACGG AACTTCACCG CCGGTAAACT CAAACTCGCC GTGGTTCATG 
    TTTTCTTGAA ATTTAACACA ATCTCTGCAA ATAACAAAAA TAAAAAAGAT 
    TAGAGGAAAA TAAAAACAGA GGAAGTTTGT TTGTGAGAAG AATATAAAAA 
    TGAGATTTTT ACCTGTTTGG TGATATAAAC TGAGAGAAAA TGTTCATGTG 
    ATGAGCTTGA ACAGCCATTG TTGTTGAAAA AAGCTCCTAG AGATTCTGAA 
    ACAAAGAGAG AGAGAAGAGG GAGGAGTTGT GGCGACTGGT GAAGAAATCT 
    ATGGGATTGG CTTTTATTTA AGGGAGAGAA AAAAGTCAAT ATTTTTTTAA 
    TTTTCTATAA ATACATATTT ATTACTTTTA CTATTTAAAT ATTTTAGATA 
    TTTAGAATAA TTATGAATT

AT4G19700.1

Model type
Protein coding
Short Description
SBP (S-ribonuclease binding protein) family protein
Computational Description
RING; FUNCTIONS IN: zinc ion binding; INVOLVED IN: response to gibberellin stimulus; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), S-ribonuclease binding protein, SBP1, pollen (InterPro:IPR017066); BEST Arabidopsis thaliana protein match is: SBP (S-ribonuclease binding protein) family protein (TAIR:AT5G45100.1); Has 639 Blast hits to 639 proteins in 110 species: Archae - 0; Bacteria - 2; Metazoa - 215; Fungi - 0; Plants - 349; Viruses - 21; Other Eukaryotes - 52 (source: NCBI BLink).
Link
InterPro Scan - TAIR