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11-5581-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 1238972 [Map]; Strand: w
      • AT1G04540.1 - [+] show detail - Calcium-dependent lipid-binding (CaLB domain) family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 11-5581-1 - 5-prime edge 
    AAAAACTAAC AAAATCGGTT ATACGATAAC GGTCGGTACG GGATTTTCCC 
    ATCCTACTTT CATCCCGTGG TGGGCCGATG GTCTCAGAAG GATCTACTAA 
    GAAAGGTGGA GCCGGACGTG TGCAACGCAC ATATTCCGCT GACGATCTGA 
    GCTTTGTGTG ATCTTTATTT TATTGGTCTT ATATTAACTT TTATTTTTTT 
    TGGAAAACTA TATTTTTTAA GTC

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 1238965 [Map]; Strand: w
      • AT1G04540.1 - [+] show detail - Calcium-dependent lipid-binding (CaLB domain) family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 11-5581-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCA 
    CCACCACCGC ATACGAAACT GCATTCCACA CCACAAATCT TACTAAAACA 
    CGAGAAAAGT CCATTACCTC CATCTGTGTG ACGGCGGTTA TGCTTTTTCG 
    TCGTCGGAGT TTTCCGTCTT GAACTCATTC CTCCCCCGGC AGTTGCAGCT 
    GGAACGCTCG CGCCATCGTA ATCAGTGCTA CTTATATGGC TTGATCCTAT 
    GTCGTACAAC GGTGGAAGCT CTGTTCGCCA TCTCTCGAGT TTTGATCGCA 
    ATCCTTCGAT GCTAGATTCA TCGATGCTCC ATTCGCTGAG TATTGAACTT 
    TCCGTTTCGT GCGATCTATC TTTCGCCAAT TTGTCAGCCA CTTCAGATGG 
    CGATGGTCCT AACTCCGATT CAGTTAAGAT TCGTCTTCCA GCTAAATTCC 
    TCACTGGTGT ACCAAAATCG TGATGAGTTC TCATCGGTGT AGCCATGTAG 
    TTTGATCGGA TCGGGGTTGA TCCGACGATG TTTGATCTCA TTGGAGTCGA 
    ACCAACCATG TTAGACCGCA TAGGAGTTCG CATTGGAGTC GATCCAACCA 
    TGTTGGGATG CATCGGTGAC ATTGCGATGA TGTTGGATCT CATAGGAGTT 
    GATCCAACTC CGTTAGATCT CATCGGAGTA NATGCGATGA TGNTTGATCT 
    CAATGGTGTT CCGTGCTTCN ATAAGTACGG GGAAGCTCGG CCACNATCGT 
    AAGCTACCNN CCCC

AT1G04540.1

Model type
Protein coding
Short Description
Calcium-dependent lipid-binding (CaLB domain) family protein
Computational Description
Calcium-dependent lipid-binding (CaLB domain) family protein; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: Calcium-dependent lipid-binding (CaLB domain) family protein (TAIR:AT2G33320.1); Has 556 Blast hits to 454 proteins in 75 species: Archae - 0; Bacteria - 32; Metazoa - 92; Fungi - 46; Plants - 336; Viruses - 0; Other Eukaryotes - 50 (source: NCBI BLink).
Link
InterPro Scan - TAIR