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11-5618-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 2982734 [Map]; Strand: c
      • AT1G09230.1 - [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
        Distance: -110; Region: promoter
    Flanking Genome Sequence: 11-5618-1 - 5-prime edge 
    GCCATTTGCC AAAGCTAAAG AGATAGGTCT GTTAACCAAA AAAAAAACAT 
    TTTAANGGGC CACATGTGNG GAAAAGCCCA TACNCCTTTA AAACAAAACG 
    TCTCCCCGGT TNGATTCAAT CTTCTNTNTN GGTTTTTCNG GTTCGGTAAC 
    TNACCCCAAA GTCTANTCCG GTTNAATCTC CCAAATNAAT TTTATNGAAA 
    ANAACATGTC NTCGTTCTNA GTTNGGGTTT TCNANCTNTA ATAANGGCTG 
    CNCNTGCAAC NTCGGANCCG GCCGNNAATN TCCCGGCNAC CCANTTTGAA 
    TNTNAGGTTA CAAANCCGTT CGGGGTAACT NTTNTAGTTC GGCNTNTTCC 
    TGANGGAATT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 2982850 [Map]; Strand: c
      • AT1G09230.1 - [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
        Distance: -226; Region: promoter
    Flanking Genome Sequence: 11-5618-1 - 3-prime edge 
    CAAATGGCAA CAATCATTTA AATCTTCAGT AATATATTTT GTTACTTTAA 
    TTGATAAATA AATTTAACAT TACAAAAAAA AAAAAANCAN TANATNNANG 
    TTATGGNACC NGGNGGAAAN AANTTATTTT NNAAAAAAAA AAAAANNAAC 
    CGGGGGNNAG GGCCANGNCN NNCCANNAAA AAAANANNGT NGNTNGGGAA 
    GGGANCNNNN CTTTACCGGG NTCCCTGGCC NAAANNTCCT TTTTTTCNNC 
    CGTTNNAAAN CNTNACCNTC NNCAANTTTT NGNANGTTTN CGCCCANTTT 
    TNAACCNGAA CCTNNANTTT TGGGAAATTT NAAAAANNNG CCCTTTNNNN 
    NGAAAANNNA ANNNNTTTTT GGGNGGGGNC CTNCCCCCCA GTNTTTNGGG 
    CCCCCCTNGN TTNNTGGCCC CCCCCANNAA ATCCCCCAGG TNNTNCCCCC 
    ATNNTTTTTT TTCCGGGGGG AAAAGGANNN NAAAAAAAAA ATTTTTTNCC 
    NNNNNNCNAA AAANANTTTT NCCTTTGGGG ANCCCTNGGN CGGCCCCCCC 
    NAAAAAAAAA CCAAAANCCT TTNAAAANTT TTGGGGNANT TGGGNNGGGN 
    AAAAACCCCC CNATTTTTNN NGGGGGGGGG GAAATTTGGG GGGGCNTNTT 
    TANNANNCNA NGGGGGGCGG GGGGGNTNAN NAAAAGGGNC AAAANNGCNT 
    TNNNNNNCCC GGNTTTTTTT T

AT1G09230.1

Model type
Protein coding
Short Description
RNA-binding (RRM/RBD/RNP motifs) family protein
Computational Description
RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); Has 908 Blast hits to 898 proteins in 138 species: Archae - 0; Bacteria - 6; Metazoa - 655; Fungi - 76; Plants - 104; Viruses - 1; Other Eukaryotes - 66 (source: NCBI BLink).
Link
InterPro Scan - TAIR