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Mutant Lines
11-5683-1

11-5683-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence
1. Chromosome: 4; Position: 529828 [Map]; Strand: w
  - AT4G01260.1 - [+] show detail - DNA-binding storekeeper protein-related transcriptional regulator
    Distance: -281; Region: promoter
  - AT4G01265.1 - [+] show detail - raffinose synthase family protein / seed imbibition protein-related
    Distance: 0; Region: exon9 (NonCoding)
Flanking Genome Sequence: 11-5683-1 - 5-prime edge
```
GGGAAAAACT AACAAAATCG GTTATACGAT AACTATTACG GCTCATTGTA 
CAAGTGACGA GGAAACTAAT TATTGCTTGA ACAAAAACAA ATAATGTTTG 
GTCTTCCGGG AAGCT
```

3 prime edge [+] show sequence

Chromosome: 4; Position: 529781 [Map]; Strand: w
- AT4G01260.1 - [+] show detail - DNA-binding storekeeper protein-related transcriptional regulator
  Distance: -234; Region: promoter

ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCT 
TTCTCAAGAA AAAGTAAAAT TGAGTATTGG AAAACAGAGT TGATGTCTGC 
AGCATTTATA ACTTGGAAAA TGTAATATTT TTAAACGGCT ATGATTAAGT 
ATCTCTTGAC CTTCCTCAAG AGAAAACAAC TATTAAACCA GTTATAAATA 
CTCGCACNTT AGTTAATCGC CACTCTCATT TCACAAACAA ACTTTTTAAA 
ACCTCAAAAC CAAATCGATA TAGTCTTTAG ATTGACAATG GCACCAAAGC 
AGTTGAAAAA AATCGAGAAT CCAGTAGTGT CTTCATCTGA AGAAGAAGAG 
TCTGCTTCTT CTGGCGAGTC TGCTACTTCA GGTGAAGAGT CTGACTCTTC 
CGCCGATTCA CCCGTCAAAG AGTCTTCCAA GAAGCCGGTG GTTGTGAGCA 
AGCCTTCTGG TTCCAAGACT ACTACCAAAC CGGAAAGCTC TACTGCTGCC 
AAGAGATCGT TTGAGAAAAC AGACGAAATG AGTAAGAAGA AATCGAAGAA 
CTCAATGGGT GAGGAGGATG TGAAGAAGAA GGATGAAACG CTAAAGAAGA 
ATCTGTTTGT TAGGTTATTC ACCGAAGAAN ACGAAGCTAT TTTGCTTCAA 
GGCTTCCTTG ATTTCGCTAC TAANAAAGGA AACCCTAGTG ATCATATCGA 
TGATTTTTAT GAGTCTATCA AGAACTCCAT CAGTTTTGAT GTTACCNAAC 
CTCAACTGGG NACC

AT4G01260.1

Model type: Protein coding
Short Description: DNA-binding storekeeper protein-related transcriptional regulator
Computational Description: DNA-binding storekeeper protein-related transcriptional regulator; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF573 (InterPro:IPR007592); BEST Arabidopsis thaliana protein match is: DNA-binding storekeeper protein-related transcriptional regulator (TAIR:AT4G25210.1); Has 1175 Blast hits to 958 proteins in 167 species: Archae - 0; Bacteria - 77; Metazoa - 317; Fungi - 112; Plants - 260; Viruses - 0; Other Eukaryotes - 409 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G01265.1

Model type: Pseudogene
Short Description: raffinose synthase family protein / seed imbibition protein-related
Curator Summary: Pseudogene of AT4G01265; raffinose synthase family protein
Computational Description: similar to ATSIP1 (ARABIDOPSIS THALIANA SEED IMBIBITION 1), hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] (TAIR:AT1G55740.1); similar to unknown [Populus trichocarpa] (GB:ABK95734.1); contains InterPro domain Raffinose synthase (InterPro:IPR008811)
Link: InterPro Scan - TAIR