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11-5690-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 18254605 [Map]; Strand: c
      • AT4G39190.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: -1532; Region: intergenic
      • AT4G39195.1 - [+] show detail - pre-tRNA
        Distance: 384; Region: intergenic
    Flanking Genome Sequence: 11-5690-1 - 5-prime edge 
    GGGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCCC TGAATTTGTT GACCTACAAG CCATTTTTCC 
    ATCTCTTAGT GAAGAAGGAA TTGAATTTAT AATTTTCTCA TGAAATACAA 
    TAAATGTACG TTAGAAAAAG TAATAATATT TCCTTACAAT AATATAAGCT 
    AATCCTAATC CATTGAGACA AAAATAATAT AAGGCAACCC ATACAACCCT 
    AATAAACAAA AGTCCTAGTT TATATATCTT CCAAAAATTA AACTTAAATA 
    CAACATAATT TTCTACTCGA TAATAATTTG TTTCGGCACA GTGGGAAAGC 
    T

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 18254613 [Map]; Strand: c
      • AT4G39190.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: -1540; Region: intergenic
      • AT4G39195.1 - [+] show detail - pre-tRNA
        Distance: 376; Region: intergenic
    Flanking Genome Sequence: 11-5690-1 - 3-prime edge 
    CTTAAAACGG NAGAGGTATT TTACCGACCG TTACCGACCG TTTTTTTGNT 
    ATTTCTTTAA TGTCTTGTCT CTTTCTAACC AAAAGCATAC AAGAGGTGGT 
    CTCATGATTT CAAATTTAAA TTTTCATTAT TGGATACACT TTGACAAAAG 
    CCCCACTTCT TTTCTGTAAA AAGTTGAAAT GAAGATTCAT TATTGGTGTA 
    TCATAATATT ATTCAGAACA TCCACAAGCG AAACGTGTCT TCATATTTTG 
    ATCGGAACTT TCGTATTAAT GCCGCAGTAG TAAGAAACAA AAATAAAATT 
    TGATCACTTA GACAAAAATG AGTTCGCTAC ATACGCCTTA GTTATAGTCA 
    TCACTCATCA TGTATATCTA AAATAACAAT TTTAAAAAAT GTAAGAATTT 
    GACTCAAAAA AATAAAAAGG GAACAAAGTC CGACCTGCCG GAATCGAACC 
    AGCGACCTAA AGATTACAGC AACTACTACA GTCTTCCGCT CTACCAACTG 
    AGCTAAGGTC GGATAATTAA TAGTATACTC ACACTATACA AATATAGCGC 
    TTATACTTTA ATATGGGCCC CTAATGGGCT TGATTAGAAG GCAAATTATA 
    TGCGTNAGCA CAATTTGAAA AAGAACCAAT TTAGTCAAGT GATGATGGGA 
    GTTNAACCCT AATTAGGACT CCCATAAACA AAANTTCCAG CTTAGCGGAC 
    TACATACATC GTTAAAAGAC TTTGGGCCTT GATANTTGAN NCTGAAACAA 
    CAATATGAAT TTTTANNTTA TTN

AT4G39190.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G21560.1); Has 5536 Blast hits to 3562 proteins in 401 species: Archae - 12; Bacteria - 497; Metazoa - 1363; Fungi - 374; Plants - 149; Viruses - 22; Other Eukaryotes - 3119 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G39195.1

Model type
Pre-tRNA
Short Description
pre-tRNA
Computational Description
tRNA-Tyr (anticodon: GTA)
Link
InterPro Scan - TAIR