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11-5711-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 18051895 [Map]; Strand: c
      • AT4G38600.2 - [+] show detail - HEAT repeat ;HECT-domain (ubiquitin-transferase)
        Distance: -2643; Region: intergenic
      • AT4G38620.1 - [+] show detail - myb domain protein 4
        Distance: -1656; Region: intergenic
    Flanking Genome Sequence: 11-5711-1 - 5-prime edge
    CATGCATGAT GATGGCCCTC TTCTAGAAGG TTAGGTTCTT AGCTAAAGGC 
    CAAGATTCTT CAAATCATCA ACAAAAGTTT ACGTCCATTT ACATCTGAAT
    CAAAGTTAAA CCTCAAATCA CNTTTTTCAC ATTCACTATA TACACCCCAA
    TTATCTTATT TATTGATCTT TCTTTTTTCT TGCAACTAAA TTATAAGAGA
    CAAATTCGTA GTTTTTTTTT TTNTNAAAAA CCAAANGCNT NAACCCTNCN
    NGCAAAACGT TTTTNAACAT NNNGGGAAAA NAANAGTNCC CCNGGGGAAT
    NATTCNNTNN GNGGGGGGNT TTTTTTTNAA AAAAAAAANN GGNTTTNCCT
    TNTNACCNGC CCNNNNANGG GGNTNGNAAA NNNCGGGGGG NAAANNNCNA
    NGGNCTTNAN TNTNNAACNA AAANTGGGGN CCCAANTTTN NTTTANNNNN
    AANCCCCANG NANCGGGTAA ATTTTCNNTT TNNTTNANGA AAANNNCCGG
    TTTTTAAAAA ANNGGGGGAA AATTTTTTGG TTTTTANGGG GGGGGCCAAA
    AAAAAAAAAN NTTTTTTTTT TNGGGCCCCN NTNNGGGGGG ANCGGGGGAT
    TGGGTNCCCC NCCCCCTTTN TNNTNANGGN TNAAAAAAGG NANNCNTTGG
    GGGGAAATNA AAANANAANT TGGGGNTTNN NNAANCAAAA ATAAAA
  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 18051965 [Map]; Strand: c
      • AT4G38600.2 - [+] show detail - HEAT repeat ;HECT-domain (ubiquitin-transferase)
        Distance: -2713; Region: intergenic
      • AT4G38620.1 - [+] show detail - myb domain protein 4
        Distance: -1586; Region: intergenic
    Flanking Genome Sequence: 11-5711-1 - 3-prime edge
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCG 
    NATGAGGTGA GTGATTTTGT ACCAATAGAT TAAACAAATT GAAATTCAAC
    TACTCTCTCT CTCTCTCTCT CTTTTTCGGT TTTTTCATCT TTTTCAATAA
    ACCATTATTC TTTTTCGTTT CTTCTCACAT TTTCCACCTA ACTTACCAAA
    TTTCACAATT TAGTTCAACT TTTTTTGTTT AGCATACATG GACAGTACAC
    AGTAGATACT ATAGTTTAAT TATTCTCTCC TATATACTGN TATGTGTTCT
    ATTCTTCAAC TATTCTCCTG ACATACGAAT TACTACATAC GTATATGATT
    AGTGTTGTCG ATCGTATTCT AAAAATATAG ATACGATTAG TGCTATAATA
    ATATTCCGTC CAGTTAGAGT TCAACATTGT TAAAAAAAAA ATCTNTTAAN
    AAGTNTNGAT TTTTNAAGTC TNTAATATNA AANAAATANA NGGGGGTTCG
    ANAAAACCNT TNTAAGTCAN GGTTCTANAA GGCACATTNT TTAATNNAAA
    NAGTTTATCA TATATGTATA TGTTCNAATN TATATGTATG GGNCATGGGG
    GTTCTTGTNG TATTGGTTTT TTACTGAAAT NTTAAAAAAA CATGAGCNTT
    NATCACAAAT TTTTAAACAT GAAGCGCTTN GTCTTTNGGG GANAGNANTT
    TGAAAACCAT NTTTATNTTA CAGNNTNTCC GGNCCCCCCA ATAATTNGTT
    NNTNGGAAAG GCTT

AT4G38600.2

Model type
Protein coding
Short Description
HEAT repeat ;HECT-domain (ubiquitin-transferase)
Curator Summary
encodes a member of HECT ubiquitin protein ligase family that is involved in trichome cell morphogenesis. Mutants in this gene exhibit supernumerary trichome branches and increased DNA content.
Computational Description
KAKTUS (KAK); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: trichome branching, DNA endoreduplication; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024), HECT (InterPro:IPR000569); BEST Arabidopsis thaliana protein match is: ubiquitin-protein ligase 4 (TAIR:AT5G02880.1); Has 6273 Blast hits to 5534 proteins in 324 species: Archae - 2; Bacteria - 240; Metazoa - 3391; Fungi - 909; Plants - 600; Viruses - 3; Other Eukaryotes - 1128 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G38620.1

Model type
Protein coding
Short Description
myb domain protein 4
Curator Summary
Encodes a R2R3 MYB protein which is involved in the response to UV-B. It functions as a repressor of target gene expression. One of its target genes encodes cinnamate 4-hydroxylase; mutants accumulate sinapate esters in their leaves. MYB4 binds to its own promoter and represses its own expression. Nuclear localization of MYB4 depends on the action of the beta importin SAD2.
Computational Description
myb domain protein 4 (MYB4); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 32 (TAIR:AT4G34990.1); Has 9208 Blast hits to 8453 proteins in 515 species: Archae - 0; Bacteria - 0; Metazoa - 855; Fungi - 510; Plants - 6018; Viruses - 3; Other Eukaryotes - 1822 (source: NCBI BLink).
Link
InterPro Scan - TAIR