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11-5726-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 1213102 [Map]; Strand: c
      • AT1G04470.1 - [+] show detail - Protein of unknown function (DUF810)
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: 11-5726-1 - 5-prime edge 
    AATGTGTGAT TATAGGTTGT TGAGCTATCA TGATTATTTT CAACGAGGGA 
    ACGTGGGATT GATCGAGAAT CTTCTGCCAT TAGCGTTGTC TTCTTCTAAG 
    ATCTTGGGGG AGGACGTGAC AATCTCTCAA ATGAATGGTC TAGAGAAAGG 
    TGATGTGAAA TTGGTGGATT CTTCAGGGGA TCGCGTCGAT TACTATATAA 
    GAGCATCTAT TAAAAACGCC TTCTCAAAGG TAATAGAAAA CATGAAGGCC 
    GAAATCGAAG AAACAGAGGA AGGAGAAGAA GAAGCGGCAA CTATGTTGCT 
    TCGGCTAGCT AAGGAGACAG AGGATCTTGC TTTGCGCGAG AGCGAGTGTT 
    TTAGCCCGAT ACTTAAGAGA TGGCACTTGG TTGCAGCTGG AGTCGCCTCG 
    GTTTCGCTTC ACCAATGTTA TGGTTCCATC TTGATGCAGT ACTTAGCTGG 
    TCGATCGACA ATCACTAAAG AGACTGTTGA AGTTCTGCAA ACTGCGGGGA 
    AGCTCGAAAA GGTTCTTGTG CAGATGGTGG CAGAGAATT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 1219055 [Map]; Strand: c
      • AT1G04490.2 - [+] show detail - Protein of unknown function (DUF3527)
        Distance: 0; Region: exon4 (CDS)
      • AT1G04490.1 - [+] show detail - Protein of unknown function (DUF3527)
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: 11-5726-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTACTTTT 
    GCTCGAGAAA GAGATTACCT TTTTATGCAT CTTTTCAGAT TCAGCCACAT 
    AGTTTTCTCC TACTTTGGTC AAAATATGAC TTGGACAAGT AGAGGCCTCA 
    CATGATACTT TGGGACTGCT TCTAACAATC TGTAACCATT TCCCGTTGCA 
    TAAAACAGAC AAACATTGTG CATCTTTCTT AGAAAACAAG TTGCTTGATG 
    GATTCTTCAC ATTCATCAAT GGATTGTCAT GCTCAGGAAC ATTGTTTTGA 
    GCATCATGAG TTTGACCCTC CATCTCTATT GCCAAATGCC ACAGGAATT

AT1G04470.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF810)
Computational Description
CONTAINS InterPro DOMAIN/s: Munc13 homology 1 (InterPro:IPR014770), Protein of unknown function DUF810 (InterPro:IPR008528), Mammalian uncoordinated homology 13, domain 2 (InterPro:IPR014772); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF810) (TAIR:AT2G33420.1); Has 201 Blast hits to 187 proteins in 29 species: Archae - 0; Bacteria - 4; Metazoa - 3; Fungi - 4; Plants - 177; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G04490.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF3527)
Computational Description
Protein of unknown function (DUF3527); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3527 (InterPro:IPR021916); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF3527) (TAIR:AT2G33360.2); Has 121 Blast hits to 119 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 121; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G04490.2

Model type
Protein coding
Short Description
Protein of unknown function (DUF3527)
Computational Description
Protein of unknown function (DUF3527); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: root, stamen; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3527 (InterPro:IPR021916); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF3527) (TAIR:AT2G33360.2); Has 121 Blast hits to 119 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 121; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR