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11-5745-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 11185048 [Map]; Strand: c
      • AT5G29550.1 - [+] show detail - transposable element gene
        Distance: -534; Region: promoter
    2. Chromosome: 5; Position: 11186554 [Map]; Strand: c
      • AT5G29550.1 - [+] show detail - transposable element gene
        Distance: -2040; Region: intergenic
      • AT5G29560.1 - [+] show detail - caleosin-related family protein
        Distance: 3989; Region: intergenic
    Flanking Genome Sequence: 11-5745-1 - 5-prime edge 
    ACGAAAATGC CCGAAAAAGT ACTAAAAGGT CAAAATTTGG GGTCGACAAA 
    AAGTCAATGG AAAAGTTCCA TTGTCCTGCT TCTTTCGTCG GAGGGCTGTC 
    TTTGGGCTTT CCGAAAAGGT ATCACATGCC AAGTTTGGCC TCACGGTCTA 
    AAAGTTATGG AGTCATAAAG TTTTAACCAA AAAAAAAAGG TTAANCNTAA 
    AAAAGGGATN CANCCCCNAG GACTTCCCGG GAGGNCACCC NTCCTANTAC 
    TACTTTCNCC CAANCNCCCT NAACTGCGGA GTTNTNANGG NATN

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 11185666 [Map]; Strand: c
      • AT5G29550.1 - [+] show detail - transposable element gene
        Distance: -1152; Region: intergenic
      • AT5G29560.1 - [+] show detail - caleosin-related family protein
        Distance: 4877; Region: intergenic
    Flanking Genome Sequence: 11-5745-1 - 3-prime edge 
    ATTTTCGTGA TTTGGGCTAT ATTACGGACC CAAAATTACT TGTTCAAGCA 
    TTGTTTTCGA ATTTTTTCAT GCATCAAAGC TCATTAAGAC TAGATGGGGT 
    ATCCCTACAT AGCGGGTGGG ACCCACGGCG AATGGTTCAT CAAGTCTTCA 
    AAAAAGAATA TATACGATTG CATTGCATAT ACTAACGGAT GCGATCATAC 
    CAGCACTAAT GCACCGGATC

AT5G29550.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
gypsy-like retrotransposon family (Athila), has a 7.4e-126 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)
Link
InterPro Scan - TAIR

AT5G29560.1

Model type
Protein coding
Short Description
caleosin-related family protein
Computational Description
caleosin-related family protein; CONTAINS InterPro DOMAIN/s: EF-HAND 2 (InterPro:IPR018249), Caleosin related (InterPro:IPR007736); BEST Arabidopsis thaliana protein match is: ARABIDOPSIS THALIANA PEROXYGENASE 2 (TAIR:AT5G55240.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR