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11-5750-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 1224188 [Map]; Strand: c
      • AT1G04500.1 - [+] show detail - CCT motif family protein
        Distance: 0; Region: intron1 (CDS)
      • AT1G04501.1 - [+] show detail - unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archa...
        Distance: -364; Region: promoter
    Flanking Genome Sequence: 11-5750-1 - 5-prime edge 
    GGGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCTC GTAATAATCC GTGCAATGTT TATTGTTTGT 
    CCTCGAATCT GTTTTTATGC CCTTGAATGG TTTCTCTTCT TTGGGTTTCC 
    TCTTTTCTAT CATACATTGC TTAAATGATT AAAAAGCATG AACNTTTTTT 
    TCCTGAAAAT TTTGCATGTA TATATCTATG ATTTATTCGC AAGGAATAAA 
    ATTATTTTCT GAAATCTTTG TATTTTGTAG GTAACATCGT TTTCTTAATT 
    TTCTTAGTTA TTCGATTTTA TCTTTTGTCA AATTGCTTCA TTCCTTTTAC 
    TTTCTTTTCT GTTTCTGGTT ATTCTANATA CAATTCAGTT CATATTCCAA 
    AAGTCTGAAA CGATAATTAG TAAAGCAAAC TTTTTAGTGC TAACTCTTTT 
    GTACGGGGTT CATACGTAGT TACGTACCTT CTCGCTAGCC AACCACAAAT 
    CGTCACAATA CTTAATCANA TAGAATAGAA CAGTTTATCA NAATTACCAN 
    NCCNGGCCGN NGACCACNCN TGCCCNNNAG

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 1224198 [Map]; Strand: c
      • AT1G04500.1 - [+] show detail - CCT motif family protein
        Distance: 0; Region: exon1 (CDS)
      • AT1G04501.1 - [+] show detail - unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archa...
        Distance: -354; Region: promoter
    Flanking Genome Sequence: 11-5750-1 - 3-prime edge 
    TGAAAACGGT AGAGGTATTT TACCGACCGT TACCGACCGT TTTCATCCCA 
    TGGAGAGCTG CTCATGAGAC GAAATTACGT CCTGCGACAT GTTTATGTGT 
    TCTTTATGGT CTCCAAATTG TGAATGATTT TCCGGGAATG AATCCAGAGA 
    GAAAATTCCC CAGGAAAAGG GAAAGATTAT TGAAGGAGGC CTTCTTGAAT 
    GTGGTAGTGG AGCTAGTGAT GTCTGAACAA GAAAATCTAA AGAATTAAAA 
    TACTGGAACA AAAGAGATAA TAATTAATCA AACAGAACAG AATAAAAATC 
    TGTTTAAAGA CAGAGAAGAG AAGAAATTTC TTACAGGTTT CTTCTGGAGA 
    AACTAATGAA GGTTATGGAA GTTATCGTAA CCAATTTATT TATACTTATG 
    GTTTAAATGT GTATCTATAT GTGTATGTAT GCAAAATGTA ATAAGAAAAA 
    TGCCAGCGTG GCAATTGACG TTAAACGCGC TGGTCCTGGA GTTTCTTATT 
    CTCGTGACGT GGCGTGTAAC GATTGGAATA ATTGAGTTGA CGTGGAGAAA 
    ATAGTCCCAC CTAAGTGATG ACTTGGTTGA CCGGTAAAGG AGTTTGACCC 
    AATTCTTTTT GTCGCGATGA TTTTTGACTT TCTGACTGAA ACTTGTGCTA 
    AATTAAGCCT TCTATTTATA GAATTTGGCT TTTCTATTTT ATTTTTAGCA 
    ATTTAATTTT TCATTTTCTA TTTATTTACT TGGTTGGGTT TTTTAAATGC 
    TGGTAANAAG TGGAAAANAA N

AT1G04500.1

Model type
Protein coding
Short Description
CCT motif family protein
Computational Description
CCT motif family protein; CONTAINS InterPro DOMAIN/s: CCT domain (InterPro:IPR010402); BEST Arabidopsis thaliana protein match is: CCT motif family protein (TAIR:AT2G33350.2); Has 1789 Blast hits to 1789 proteins in 111 species: Archae - 0; Bacteria - 6; Metazoa - 2; Fungi - 2; Plants - 1654; Viruses - 0; Other Eukaryotes - 125 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G04501.1

Model type
Protein coding
Computational Description
unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR