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11-5762-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 7253546 [Map]; Strand: w
      • AT4G12110.1 - [+] show detail - sterol-4alpha-methyl oxidase 1-1
        Distance: -503; Region: promoter
    Flanking Genome Sequence: 11-5762-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    TCCCGCTAGT CAAGGTAAAT AATTAAGGGA ACGATGTTTT TTTAAAGAGG 
    ATACAAAACA AAAGACAGGT TTACTTTAAA AACAAAAGTT TTTCTAAATG 
    GATGATATTA GTATCAAGTT TTTTTTTTNG TNAAANAAGT TTTTAAGTCC 
    TAAGTNCAAN GTAAATNNCC TTTNAANGAT NAATTNGNCG NCCCCCTTNC 
    TNGCAATTNC AAGTTTTCAC CCCAANCNGN CCAAATCNTT ANTCGGNCTA 
    AANCNGTNGA TTANCGTAAT AGCCCNTNTT NNCNTTNGCG GCAAAAAAAN 
    ATTCTNTNTT ANTTNCCCNT NCAAANCTNT NTTTNTTTNG TTTTNAANCT 
    AAANCTTTNC NCNNCCCANA TATANANATA TATATTTTTT TTTNTTTNNT 
    GGGGGNCCCC CCCCCCNNTN NAAAAAAAAA NCNCCCCCCC GGGNCNGNAA 
    NCCCCCCGGG CCNNNANA

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 7253548 [Map]; Strand: w
      • AT4G12110.1 - [+] show detail - sterol-4alpha-methyl oxidase 1-1
        Distance: -501; Region: promoter
    Flanking Genome Sequence: 11-5762-1 - 5-prime edge 
    GGGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCTA CATCCCTTGA TGATGACTGC TATGTTTGTC 
    CTCGACTCCT CGTCAACTAT TCTAATGAAT GGAAAGAAGT ATTTGAGCCA 
    ATATTTTAAA ATTTAGTGGA AAAACACCTC AACTTGTTTT GTGTGAAAAT 
    GCTTTGCTTT ACTTACCGTA CAAAAAATCT AAGATATATA TAGCACCAAT 
    TTTTAAAGAG TTTGTTTTTT TGTGATTTCA TGATATTTAT CAAATACACA 
    TGCCATAAAT AATCTAATTT TTCATGTCTT TTTAGCACTA GTTGGCTAGC 
    TAATTTTTCA TGTCTTTTTT ATCAAATACA CATGCCACAA AATAGTCTTA 
    ACTCAACAAA GTATTTATTA ATTTCCCAAT AACACAAAAC ATTTGAGAAT 
    TGGGAAGAGA AAAATATATA TATCACAAAA AGTTAAGACT ATATCTAGTG 
    GCACAAAATA AAATCCCGTG ATGCAATTTA ATCCCAAAGT AATATAAATA 
    CTAATCACTG GAGCCACGTC TTCACTCCAA AAACATTCGC CAACTATACA 
    CATATAACAA AACAAAACAC TCTCCTGNGA CTNCTCTTCT CTTCTTCTCT 
    CTCGATCTCT TCCCCAAAAT CTTCANATCT CTACATCACC GGAGAGACNA 
    NAAACACTCA CCGNGAGAAA ACCATGATTC CTTACNCTAC ANNNNAANAA 
    NCTCCANNCN GGGCCGNNNA CCCNCGNC

AT4G12110.1

Model type
Protein coding
Short Description
sterol-4alpha-methyl oxidase 1-1
Curator Summary
Encodes a member of the SMO1 family of sterol 4alpha-methyl oxidases. More specifically functions as a 4,4-dimethyl-9beta,19-cyclopropylsterol-4alpha- methyl oxidase.
Computational Description
sterol-4alpha-methyl oxidase 1-1 (SMO1-1); CONTAINS InterPro DOMAIN/s: Fatty acid hydroxylase (InterPro:IPR006694); BEST Arabidopsis thaliana protein match is: sterol C4-methyl oxidase 1-2 (TAIR:AT4G22756.1); Has 2081 Blast hits to 2076 proteins in 340 species: Archae - 0; Bacteria - 283; Metazoa - 426; Fungi - 681; Plants - 428; Viruses - 3; Other Eukaryotes - 260 (source: NCBI BLink).
Link
InterPro Scan - TAIR