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11-5774-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 2439798 [Map]; Strand: w
      • AT1G07890.3 - [+] show detail - ascorbate peroxidase 1
        Distance: 133; Region: intergenic
      • AT1G07900.1 - [+] show detail - LOB domain-containing protein 1
        Distance: -2824; Region: intergenic
    Flanking Genome Sequence: 11-5774-1 - 5-prime edge
    GNGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCGAG TCTATGTACT ACGAGATTTA CACAAGATCA
    ATGGTAAACC TGACATTGTT CCAAAACCAA TCTAGACCAG TTCACTTACC
    GAATTTTAGT TCCATACCCA TAAACCAATC CAAAGTGATT CTATCACCAC
    ATGCAACAGC ATGTAATGAT GTGGTGCCCG AATAGGCGGA TTCCATCGAT
    GTTGATCAGA CGATGCTTTA GATCAAAGAC CGGCGTGAGC TGAGACGGAT
    GGCTCTGGCT TATAATGTCA CCACTATGAT TACCAAAGTG TTTGCTGCTT
    TGATCACGGC CGAGGGAGTA AAGAGCTTGA AGTCAAGTGT TATTCAAATG
    ATTGTCATTC AGCACTCCTT TTCTAGGTGA AGGATCTTGC CTATGCGCTT
    CTCTAAAACC GTTTTTTTCT ATTTTTATGT TGTCGATGGA AACGTCTCTT
    ATTTTTATCT TGAATTGAAC CGAATCTGCA ATTAGGACCC TCTTGAATCT
    TGAGTGGTCT ATGTCGTAAT CAGGTTTTAG AAAAGATGAG ATTGGAGCGA
    CGAGTAGAGA GAAGGGAAGA GTGGAGTGAC TTTTTGTGAA CACGTTCACA
    CCATTTAGAG TTCGAAACGG TTCTTTTTTC TTTTTGTGTG TGTGTGNGGG
    AAATTGGCTG TAACATTACT GAGCTCCTCT TTCATTCCGT GNGGGTCTCG
    TTTGTTTTAT GTATAATCCT
  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 2439812 [Map]; Strand: w
      • AT1G07890.3 - [+] show detail - ascorbate peroxidase 1
        Distance: 147; Region: intergenic
      • AT1G07900.1 - [+] show detail - LOB domain-containing protein 1
        Distance: -2810; Region: intergenic
    Flanking Genome Sequence: 11-5774-1 - 3-prime edge
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATATA 
    ACATAGTCAA ATCATGTTAT ACTAATACTT CTACTTCTGA TTAAAGATTT
    GGCTGTTTAT CACTTTATAT AGGCAATTAG CCACTGTATC TTCAAACTCT
    TAATCCAAGT TCTACTGTTA TTAGAGACTA AGCAGATATG AATGGATTTG
    AGGCATAAAT ATCGAGAGAA ATTAATTTTA TTAATGTGTC TAAGCAGCAA
    AAGCGCAACG GATGTGTTCA AATCACAACC CACCGAAAAA AACAGATACG
    TAAATCCGAG AGTACATTAA GCAATCATAT GACAAAGTTC AAATGCAATG
    CGACCCCTCC AGCCCCCAAC CAAAAACAGC CATGACTCTC GGGGAGACAC
    ACACACACAC ACAGAGCATA CGTCACAGCT TAAGCATCAG CAAACCTGCN
    NCCAACAGAT ACAAACTCAA ATCACACCAC TGAATTAATA TTNACTTTCT
    AAATGATTCA TAGATTCANA ATAAGNNCCC AAGCTCAAAA AGCTACCANC
    CNGGGCCGNN NACCACGCGN GCCCCT

AT1G07890.3

Model type
Protein coding
Short Description
ascorbate peroxidase 1
Curator Summary
Encodes a cytosolic ascorbate peroxidase APX1. Ascorbate peroxidases are enzymes that scavenge hydrogen peroxide in plant cells. Eight types of APX have been described for Arabidopsis: three cytosolic (APX1, APX2, APX6), two chloroplastic types (stromal sAPX, thylakoid tAPX), and three microsomal (APX3, APX4, APX5) isoforms. At least part of the induction of heat shock proteins during light stress in Arabidopsis is mediated by H2O2 that is scavenged by APX1. Expression of the gene is downregulated in the presence of paraquat, an inducer of photoxidative stress.
Computational Description
ascorbate peroxidase 1 (APX1); FUNCTIONS IN: L-ascorbate peroxidase activity; INVOLVED IN: in 6 processes; LOCATED IN: cytosol, cell wall, chloroplast, plasma membrane; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant ascorbate peroxidase (InterPro:IPR002207), Peroxidases heam-ligand binding site (InterPro:IPR019793), Peroxidase, active site (InterPro:IPR019794), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: ascorbate peroxidase 2 (TAIR:AT3G09640.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G07900.1

Model type
Protein coding
Short Description
LOB domain-containing protein 1
Computational Description
LOB domain-containing protein 1 (LBD1); CONTAINS InterPro DOMAIN/s: Lateral organ boundaries, LOB (InterPro:IPR004883); BEST Arabidopsis thaliana protein match is: LOB domain-containing protein 11 (TAIR:AT2G28500.1); Has 1035 Blast hits to 1030 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1035; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR