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11-5792-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 1444876 [Map]; Strand: w
      • AT1G05030.1 - [+] show detail - Major facilitator superfamily protein
        Distance: -3459; Region: intergenic
      • AT1G05040.1 - [+] show detail - BEST Arabidopsis thaliana protein match is: Ubiquitin-associated (UBA) protei...
        Distance: 2493; Region: intergenic
    Flanking Genome Sequence: 11-5792-1 - 5-prime edge 
    GATAAACTAA CAAAATCGGT TATACGATAA CGGTCGGTAC GGGATTTTCC 
    CATCCTACAT TCATTANAGA TGGCAAGGAG GTGTTTAAAG GTGAATCTGG 
    GATTATAAGA GATTCNACGT TACGGTGATG AAGTTGTGGC CGGAATTTGA 
    AGAACATGAC CGGAAATTTA CAACGAGATG GAGGAATTTT CTTCGTCGGA 
    GATTATTTAT GATGATGTCA TACAACGGTT ATTTGTGATG ATGTCACACA 
    ACGGCTATTT TGGATGATGT CATACAAGGG CTATTTTGGA ATTTGTTTGA 
    GTATAGAGAA CAAAGGACTA CGGTGAAGAT TCGTGAGATG ACTGAGAGAA 
    GACGACTTGG AGAGGTATCA GATCAGGAAA AGAGTCTCAC GTTACATCAA 
    ATTCCAATAC GATTTCAGGT GAGTTTCCTT ATTACGTTTT TAAATTTTCT 
    ACTAGATTTA CAAAACGATA TGAAACTAAC CGGATTTTGG ATC

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 1441877 [Map]; Strand: w
      • AT1G05030.1 - [+] show detail - Major facilitator superfamily protein
        Distance: -460; Region: promoter
    Flanking Genome Sequence: 11-5792-1 - 3-prime edge 
    CTAATGATCG ACCCGCCGAA GAGATACGAA CGAACGAACG AACTCACCGA 
    ATAATTCTCA AAGCGAGAAT GAGATTCATA ACGGCTCTTC GACATAACTT 
    GCTCAAGAAG AAACTCAAGT TTTTTAAAAG AAGAAGAAGA AGATAAAGCA 
    CCTTTAGGGT TTTGCTCTTC GGAGGTTGAG AACTTTGATC CTTAAGAAGA 
    GATTAGTATA GTATTTATAA GTATTTTTTT TTAGGAAAGG GAGGAAAATC 
    CCCCCATTTT ATTAAAGAAA ATACGAAATT ACATTCGGAT AGTTTTTGGA 
    CGCNCATGCC CATTTATAAG GAAGTTTATC ACCGACGAAA AGGAAATTTA 
    ACTTTGATAA AGAATTTTAA AAAGAAAATA AAAAGGAAAT TCTGAGAACG 
    CAAAAATAAA AGGGAAATCA CTCAGTNTTT GAGCACGTGA GTGTCACGTG 
    ATTACAAGTT TATTATTTTC CGTCGCCTCA AATTTTATTA TTTTCGCTTC 
    GCCGACGTAT TTCTCTNTCT TCCGTCTAGT CTAGCTCTCC GATCATGTGG 
    GNGACGAATA CCGTACTTCT ACATCATCCC AATGCTCTGA CCCGATTAAC 
    CTTTTNTTCC CCGACCCGAC TCGCCCACTT TNGTAAAGCC TCTTCCTTTT 
    CCCGTTTNTT TNGGTCTTCA AAGAGGAANA AGCGGGTTAC GACATTGTCN 
    ACNAAAAAAC CAGGTTCAGC TT

AT1G05030.1

Model type
Protein coding
Short Description
Major facilitator superfamily protein
Computational Description
Major facilitator superfamily protein; FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: mitochondrion, integral to membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), Major facilitator superfamily (InterPro:IPR020846), Sugar/inositol transporter (InterPro:IPR003663), General substrate transporter (InterPro:IPR005828), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: plastidic GLC translocator (TAIR:AT5G16150.3); Has 32095 Blast hits to 31550 proteins in 2260 species: Archae - 588; Bacteria - 15264; Metazoa - 5199; Fungi - 6752; Plants - 2455; Viruses - 0; Other Eukaryotes - 1837 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G05040.1

Model type
Protein coding
Computational Description
BEST Arabidopsis thaliana protein match is: Ubiquitin-associated (UBA) protein (TAIR:AT2G33010.1); Has 14 Blast hits to 12 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR