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11-5797-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26863774 [Map]; Strand: c
      • AT5G67330.1 - [+] show detail - natural resistance associated macrophage protein 4
        Distance: 0; Region: exon3 (3UTR)
      • AT5G67340.1 - [+] show detail - ARM repeat superfamily protein
        Distance: -782; Region: promoter
    Flanking Genome Sequence: 11-5797-1 - 5-prime edge 
    TTCATGTTTA CGTTTTATTT CTGCCAAAAT TCTAAGAAAC GCCGGAAGTT 
    TTACACAAAC GATACTNTTG CNNTCCNANC AAGTGGTAGG NTCGAANTAA 
    CNNTNNNACC CNATANNACC AANGCNTNNN GACATNGTGC TTGNACCCAA 
    CACTGGAGAA CCNCNNNATT GTCTAGTAGT GTCGTTTTCA NATAAAGTAG 
    ANCAAATCTC GNNTNATTCG GTATAGCTTC GAATGNNAAA GGTNTTCTTC 
    TGCGTTTTCC TTTACATCAC TCATGNTCTC CTCTGNGGGT CTTNATNTNA 
    AGAACCNACT ACNNGCCNAG GAGTGTACNT GAGTCCTCNT AAGATAAGGT 
    AAAGTACAAA CACAACATAA GCAATTGCGA ATATGATCAC TGGCACAAGC 
    AAAATCAAAT TCGTTGCAGC TCCTGAGAAG AAATCCACCA TTAGATACCC 
    ATTAATGGCT ATCACAAGAG CAGCTACTAT CCATGAGATT GTTTGGACTA 
    AAGGTTGAAT TTTGAAACTG CCCATGATTT GCTCATTGGA GACCAAGCAA 
    AGGAGTGGGA TCACAGCGAA AGGGATCTGA ACCGATTGAA GAACGTTTAG 
    CCATTCGTTG AGCTCATCAA GCATAGAATC CGATGAATCA AAGACAAGCG 
    CCACGATCAT TGTTGGTATG ATTGCACAGC TTCTTGTGAT CAAGGCTCTA 
    ACCCATTTCT TNATCTTGAG ATNCAANA

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26863867 [Map]; Strand: c
      • AT5G67330.1 - [+] show detail - natural resistance associated macrophage protein 4
        Distance: 0; Region: exon3 (3UTR)
      • AT5G67340.1 - [+] show detail - ARM repeat superfamily protein
        Distance: -689; Region: promoter
    Flanking Genome Sequence: 11-5797-1 - 3-prime edge 
    AACATGAAGT TCCTTCTTCA GATATGTTTG GTGCGTTATT TCATTTTCTT 
    TTAGATAGAT TTTTTTTTTT GGGGTTNAAG TNTAAAAGTT AAAAAAAAAA 
    NNTNAANTTT TANCCNTTAA AANTNNTGGN GGTTTTCNAA ANAAAAACCC 
    GGNACCCCGG GTTTNNAATT NNTNAAAAAA AAAAAAAGGG GNNAAAAGGG 
    GGNAAAAANG GGCNAAAANN NANGGGANCC CCCCCCCCTT TNANTTGGGG 
    NTTAANGGGN CCNAANNANN NTTNNNCCTT TNGGGGNAAN TTNNNCCCCA 
    TTTTTTTNGN NCCCCCAAAA ANCNCCCCCC CNGGNCCGGA ANCCCCCCGG 
    NCCCTNNA

AT5G67330.1

Model type
Protein coding
Short Description
natural resistance associated macrophage protein 4
Curator Summary
Encodes a member of the Nramp2 metal transporter family; like its homolog Atnramp3, localized in vacuolar membrane. Seedlings of double mutant, atnramp3-1 atnramp4-1, were arrested at early germination.
Computational Description
natural resistance associated macrophage protein 4 (NRAMP4); FUNCTIONS IN: manganese ion transmembrane transporter activity, inorganic anion transmembrane transporter activity, metal ion transmembrane transporter activity; INVOLVED IN: in 11 processes; LOCATED IN: vacuolar membrane, vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Natural resistance-associated macrophage protein (InterPro:IPR001046); BEST Arabidopsis thaliana protein match is: natural resistance-associated macrophage protein 3 (TAIR:AT2G23150.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G67340.1

Model type
Protein coding
Short Description
ARM repeat superfamily protein
Computational Description
ARM repeat superfamily protein; FUNCTIONS IN: ubiquitin-protein ligase activity, binding; INVOLVED IN: protein ubiquitination; LOCATED IN: endomembrane system, ubiquitin ligase complex; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: U box domain (InterPro:IPR003613), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein with ARM repeat domain (TAIR:AT2G23140.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR