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Mutant Lines
11-5798-1

11-5798-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

5 prime edge [+] show sequence
1. Chromosome: 1; Position: 34216 [Map]; Strand: c
  - AT1G01060.3 - [+] show detail - Homeodomain-like superfamily protein
    Distance: 0; Region: exon9 (CDS)
  - AT1G01060.1 - [+] show detail - Homeodomain-like superfamily protein
    Distance: 0; Region: exon9 (CDS)
  - AT1G01060.2 - [+] show detail - Homeodomain-like superfamily protein
    Distance: 0; Region: exon8 (CDS)
  - AT1G01060.4 - [+] show detail - Homeodomain-like superfamily protein
    Distance: 0; Region: exon9 (CDS)
  - AT1G01060.5 - [+] show detail - Homeodomain-like superfamily protein
    Distance: 0; Region: exon9 (CDS)
Flanking Genome Sequence: 11-5798-1 - 5-prime edge
```
GGGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGTATTT 
TCCCATCCTA CTTTCATCCC ATTGGCTCCT AATTTCAAAA GCCAGGATTC 
TTGTGCTGCA GACCAAGAAG GAGTAGTAAT GATCGGTGTT GGAACATGCA 
AGAGTCTTAA AACGAGACAG ACAGGATTTA AGCCATACAA GAGATGTTCA 
ATGGAAGTGA AAGAGAGCCA AGTTGGGAAC ATAAACAATC AAAGTGATGA 
AAAAGTCTGC AAAAGGCTTC GATTGGAAGG AGAAGCT
```
3 prime edge [+] show sequence
1. Chromosome: 1; Position: 34215 [Map]; Strand: c
  - AT1G01060.3 - [+] show detail - Homeodomain-like superfamily protein
    Distance: 0; Region: exon9 (CDS)
  - AT1G01060.1 - [+] show detail - Homeodomain-like superfamily protein
    Distance: 0; Region: exon9 (CDS)
  - AT1G01060.2 - [+] show detail - Homeodomain-like superfamily protein
    Distance: 0; Region: exon8 (CDS)
  - AT1G01060.4 - [+] show detail - Homeodomain-like superfamily protein
    Distance: 0; Region: exon9 (CDS)
  - AT1G01060.5 - [+] show detail - Homeodomain-like superfamily protein
    Distance: 0; Region: exon9 (CDS)
Flanking Genome Sequence: 11-5798-1 - 3-prime edge
```
AAAATGAAAA CGGTAGAGGT ATTTTACCGA CCGTTACCGA CCGTTTTCAT 
CCCTTGGCAT TGACGTGTCA CTTTGTTTTC TATTCACATT CTCTGCCACT 
TGAGGAGGCG AAAAGCT
```

AT1G01060.1

Model type: Protein coding
Short Description: Homeodomain-like superfamily protein
Curator Summary: LHY encodes a myb-related putative transcription factor involved in circadian rhythm along with another myb transcription factor CCA1
Computational Description: LATE ELONGATED HYPOCOTYL (LHY); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447); BEST Arabidopsis thaliana protein match is: circadian clock associated 1 (TAIR:AT2G46830.1); Has 2469 Blast hits to 2022 proteins in 280 species: Archae - 2; Bacteria - 257; Metazoa - 292; Fungi - 162; Plants - 1048; Viruses - 29; Other Eukaryotes - 679 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G01060.2

Model type: Protein coding
Short Description: Homeodomain-like superfamily protein
Curator Summary: LHY encodes a myb-related putative transcription factor involved in circadian rhythm along with another myb transcription factor CCA1
Computational Description: LATE ELONGATED HYPOCOTYL (LHY); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447); BEST Arabidopsis thaliana protein match is: circadian clock associated 1 (TAIR:AT2G46830.1); Has 2469 Blast hits to 2022 proteins in 280 species: Archae - 2; Bacteria - 257; Metazoa - 292; Fungi - 162; Plants - 1048; Viruses - 29; Other Eukaryotes - 679 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G01060.3

Model type: Protein coding
Short Description: Homeodomain-like superfamily protein
Curator Summary: LHY encodes a myb-related putative transcription factor involved in circadian rhythm along with another myb transcription factor CCA1
Computational Description: LATE ELONGATED HYPOCOTYL (LHY); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447); BEST Arabidopsis thaliana protein match is: circadian clock associated 1 (TAIR:AT2G46830.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G01060.4

Model type: Protein coding
Short Description: Homeodomain-like superfamily protein
Curator Summary: LHY encodes a myb-related putative transcription factor involved in circadian rhythm along with another myb transcription factor CCA1
Computational Description: LATE ELONGATED HYPOCOTYL (LHY); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-like (InterPro:IPR009057), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930); BEST Arabidopsis thaliana protein match is: circadian clock associated 1 (TAIR:AT2G46830.1); Has 2567 Blast hits to 2041 proteins in 275 species: Archae - 2; Bacteria - 252; Metazoa - 294; Fungi - 166; Plants - 1044; Viruses - 30; Other Eukaryotes - 779 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G01060.5

Model type: Protein coding
Short Description: Homeodomain-like superfamily protein
Curator Summary: LHY encodes a myb-related putative transcription factor involved in circadian rhythm along with another myb transcription factor CCA1
Computational Description: LATE ELONGATED HYPOCOTYL (LHY); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: in 11 processes; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: circadian clock associated 1 (TAIR:AT2G46830.1).
Link: InterPro Scan - TAIR