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11-5828-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 40734 [Map]; Strand: c
      • AT4G00110.1 - [+] show detail - UDP-D-glucuronate 4-epimerase 3
        Distance: -545; Region: promoter
    Flanking Genome Sequence: 11-5828-1 - 5-prime edge 
    TTTACCCGGA CTCACTCACT AGTCACTCAC TAGTCACTAT AAATCAATAT 
    CGTTATGTTT TTATCTTACA ATAAGTGAAT TTGAAGAATA AAATAGAGCT 
    TTGATGGATA TTACTATTAT ATATGCNGGT CTAGTAGATG CNGTGTTGTT 
    ATTATATTAT TCCTTGAAGA TTACTCTTTG CTTTTTTGTA CCCCATGGAT 
    AAATGTGCCT TGGTATTAAG TTGCAAATTT GATTTAATTA ATCCCTAAAC 
    ATGTTACTAG TTAGAGTTTG CACGTGACGA TCTTGGGCAG CACCTAAACA 
    TGTATTTGTG TGCGTAATTT TGTAATAAGT AAGTGCATCG AGTTTGATGA 
    ATCAGTATTT GAATGATAAT TCGATGACAG TACATTTGTT GCCATAAGAA 
    CCCTAAAGTA AGATCCATAA GGATGATGAA AGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 40839 [Map]; Strand: c
      • AT4G00110.1 - [+] show detail - UDP-D-glucuronate 4-epimerase 3
        Distance: -650; Region: promoter
    Flanking Genome Sequence: 11-5828-1 - 3-prime edge 
    CGGGTAAATG TATGTGGAAA GGCACACTTG AACAACGTAG AAAATGTCTT 
    TATGATGTAG TAAAAGAGAG CTTAGCTTAA CAAAAGTCTT TAGCAGGCTG 
    CAATAACCGT ATCCACGGTG AGTCCAAATT TCCTGTAGAG CACATTGGCT 
    GGTGCACTTG CTCCAAAACT GTCTACACCG ATGGCTTTTC TTTTGGAGCC 
    AACCATCTTC TCCCACCCAA AGGTCGACCC TGCTTCAATG CTCACTCTTG 
    CTGAAACCTC TCAAGGTAAC ACACTTTCTT TGTATTCTTC TCTTTGGTCA 
    TCAAACAGCT NCCAACTCAC CAATGACACT ACTCTCACTG CTTTTCTTTC 
    TTCTCTAACC TCTCTCCAAC CTTTGCAGCT NTCTNTAGCT CCNACCCTGT 
    NCCCATTAAG ATTACNTNTA GTTTTGTCNC TGNGGAGTTG GCTGAAATAA 
    TTTTCCCCCT TTACCATTCC TTNACCNAAN TTCCNGGNAA ANAAGCAANT 
    TTTGTNTGGA AAAACCNGGA TAAANGCCNT TTTTGTTNTT AANAAANTTT 
    GGGGGCCCCC CNNCCAAAAT TTNGGAAGGA ACCCNTTTTN CTTTGGGCCC 
    AAAACCCANT TGGAAANNCC NNTAAANCCA AANTTTTNNN NNNTTTNNTA 
    ACCCCNNNGG GGNAAAAGGA ATNGGGNNNA AAANNCCCNA AACN

AT4G00110.1

Model type
Protein coding
Short Description
UDP-D-glucuronate 4-epimerase 3
Curator Summary
Encodes a putative membrane-anchored UDP-D-glucuronate 4-epimerase.
Computational Description
UDP-D-glucuronate 4-epimerase 3 (GAE3); FUNCTIONS IN: UDP-glucuronate 4-epimerase activity, catalytic activity; INVOLVED IN: cellular metabolic process, carbohydrate metabolic process, nucleotide-sugar metabolic process, metabolic process; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040), Nucleotide sugar epimerase (InterPro:IPR008089); BEST Arabidopsis thaliana protein match is: UDP-D-glucuronate 4-epimerase 2 (TAIR:AT1G02000.1); Has 43399 Blast hits to 43389 proteins in 2971 species: Archae - 792; Bacteria - 26013; Metazoa - 773; Fungi - 412; Plants - 1214; Viruses - 37; Other Eukaryotes - 14158 (source: NCBI BLink).
Link
InterPro Scan - TAIR