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11-5833-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 13542208 [Map]; Strand: c
      • AT4G26965.2 - [+] show detail - NADH:ubiquinone oxidoreductase, 17.2kDa subunit
        Distance: 0; Region: exon9 (3UTR)
      • AT4G26965.1 - [+] show detail - NADH:ubiquinone oxidoreductase, 17.2kDa subunit
        Distance: 0; Region: exon9 (3UTR)
      • AT4G26970.1 - [+] show detail - aconitase 2
        Distance: -710; Region: promoter
    Flanking Genome Sequence: 11-5833-1 - 5-prime edge
    GGGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCCT TGACTAAGTC CTCAATGACA GCGTGAAAGG
    ACACAATTTT AGGGTCTTGA AAAGCTCTCT GGTCTTATGG CTCATCTGTA
    AGGCTCAAAC CAATCGGTTG TGTAGAGTAC AACAAACAAA ATAATTGAAT
    AGTATGTTGG TTTGTCATCT GCGTGAAGAG AGATGTGTTT AGGATGGTGG
    CTGCCATGTC CCGGGCCTAA ATGATGATCC AGATCCTGAT GGCTCTGTTG
    TCCTGCATCA TCATCAACAT CAACATTAAC ATTAGTTTAA TTTAAAGCAT
    ACCAAACACA ATACATAACT TATGTTCATA GAGAACAGTT TCAGCATAGT
    AGCAGTCTGT AACTATCAGA AAGAACGAGT CATGTTTCGT ATCCGTGAGC
    TAGAATCTGA ACTTTAGGAT TAACAATGTC AAGTTGGCTA GACTTACTTT
    GGTTCGGGTG GTTCTGCAGA AACTATCTCG GGTTCATGTT CCTTGGCCCT
    GTAAAGCAAT GTGAGAACAT GTGGTTATGT TAGTCTTCTG AAAGATGTTG
    TGCTTTGCAT CCAGGAAAAA ATAGAATGTA AGAAGATTTA ACACATATAT
    GATTAGTGCG GAGATATTAT GAATCATGAT GACTCACCTT GATTTATCTG
    CTTCTTCACT ANCTTCCTCT GGTTCACCAC CCTTAAAGCN TTANCAAAAA
    AAANGGAAAT AAACTTAACT GTNANTCT
  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 13542205 [Map]; Strand: c
      • AT4G26965.2 - [+] show detail - NADH:ubiquinone oxidoreductase, 17.2kDa subunit
        Distance: 0; Region: exon9 (3UTR)
      • AT4G26965.1 - [+] show detail - NADH:ubiquinone oxidoreductase, 17.2kDa subunit
        Distance: 0; Region: exon9 (3UTR)
      • AT4G26970.1 - [+] show detail - aconitase 2
        Distance: -713; Region: promoter
    Flanking Genome Sequence: 11-5833-1 - 3-prime edge
    NTGAAAACGG CAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    ATAGAAGAGT CAAAATGAGA AGCCATCTTC TTATACTTTG TTTTGTNTAG
    GGTGTTTGTC TCTTGGCATA ATGCTTGAGA CTTTTAGCCT GCCTTGTCCT
    TCATAGCTGA AGAGGAGCCT AGCTACCTTT TGTTTCTCTT CGTTGACNTT
    GAATAAAACA GTTTGATTGA ATAACAGTTA TTCATTTTCA TGTCATGATG
    GTAGTGGATA TAAGAAAAAA CAAATACATA GAATAATTAT TTTAATGTTT
    CAGAGGAGAA ATCCTACTTG GCTTGTGCTA GACTCATAAC CCAATCAAAA
    CTTCGTATTA CCAAAATAAG TGTAGTTCTA AATTTTATTC TGGTTTAGGC
    TGTAGTTATA AATTACTCAT TTTAGTTTGT GAATATAAAA TTACTTTCTG
    CAAAAGAAAA TATTCTCATC TTTCGACGAA AAGCCAATTA TTCGAATGTT
    CTCACGTTGG TCTGTAGCTG TAAACTTTAT AGTTTATATA ATAAGGTGTT
    CTACTGTTCT TATATAATTT GCAAGAACAA ATAATATTAA ATGCAAATAA
    AAAATAGTCA ACGGTCCAAA GTGGATCATA AGCCGTCCGT TCGGTCGTCT
    GAACTTCATC CAACGGTTAA AAGAAATATA CCTGACGTGG CCCTTGGGCC
    ATTGTATATT AGTAGTGAGT GTGCCCTTGG AAGGTTCTGT AAATGTTTAT
    TCGCCTCTAT CAGAAGCTCC AN

AT4G26965.1

Model type
Protein coding
Short Description
NADH:ubiquinone oxidoreductase, 17.2kDa subunit
Computational Description
NADH:ubiquinone oxidoreductase, 17.2kDa subunit; FUNCTIONS IN: electron carrier activity, oxidoreductase activity, NADH dehydrogenase (ubiquinone) activity; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: NADH:ubiquinone oxidoreductase, 17.2kDa subunit (InterPro:IPR007763); Has 317 Blast hits to 317 proteins in 96 species: Archae - 0; Bacteria - 24; Metazoa - 85; Fungi - 52; Plants - 37; Viruses - 0; Other Eukaryotes - 119 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G26965.2

Model type
Protein coding
Short Description
NADH:ubiquinone oxidoreductase, 17.2kDa subunit
Computational Description
NADH:ubiquinone oxidoreductase, 17.2kDa subunit; FUNCTIONS IN: electron carrier activity, oxidoreductase activity, NADH dehydrogenase (ubiquinone) activity; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: NADH:ubiquinone oxidoreductase, 17.2kDa subunit (InterPro:IPR007763); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G26970.1

Model type
Protein coding
Short Description
aconitase 2
Curator Summary
Encodes an aconitase that can catalyze the conversion of citrate to isocitrate through a cis-aconitate intermediate, indicating that it may participate in the TCA cycle and other primary metabolic pathways. The protein is believed to accumulate in the mitochondria and the cytosol. It affects CSD2 (At2g28190 - a superoxide dismutase) transcript levels and may play a role in the response to oxidative stress. One member of the family (ACO1 - At35830) was shown to specifically bind to the 5' UTR of CSD2 in vitro.
Computational Description
aconitase 2 (ACO2); FUNCTIONS IN: aconitate hydratase activity, copper ion binding; INVOLVED IN: response to oxidative stress, response to cadmium ion, isocitrate metabolic process, citrate metabolic process; LOCATED IN: cytosol, mitochondrion, chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 17 growth stages; CONTAINS InterPro DOMAIN/s: Aconitase family, 4Fe-4S cluster binding site (InterPro:IPR018136), Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha (InterPro:IPR001030), Aconitase A/isopropylmalate dehydratase small subunit, swivel (InterPro:IPR000573), Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 2 (InterPro:IPR015932), Aconitase/Iron regulatory protein 2/2-methylisocitrate dehydratase (InterPro:IPR015934), Aconitase/3-isopropylmalate dehydratase, swivel (InterPro:IPR015928), Aconitase-like core (InterPro:IPR015937), Aconitase/iron regulatory protein 2 (InterPro:IPR006249), Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 (InterPro:IPR015931); BEST Arabidopsis thaliana protein match is: aconitase 3 (TAIR:AT2G05710.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR