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11-5895-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23452909 [Map]; Strand: c
      • AT3G63520.1 - [+] show detail - carotenoid cleavage dioxygenase 1
        Distance: -2; Region: promoter
    Flanking Genome Sequence: 11-5895-1 - 5-prime edge
    ACTGAGATGA TGATGCTGCC ATCACTGAGT TTCTCCGCCA TGATTGTTTG 
    TTTTGCTGCA AGGAGGAGGT GATTTGAGAC CAGATAATAT GGCCCGCGTC
    TTGGCGGAAA CGCTTGCCAC TGTCGCAACA GGAATCTTTT TTCTTGAGAT
    GATGGACCCA GTTATATTTC CGGCCCAAAC AAAAAAAATA ACAAAAAAGC
    CCATACACGA GCCCAAGACT AACAACCACT TGAAGTAAGC CCCGTTCAAT
    TTACAATTTT AATCGACAGA GACAATCACA AACACAGATT ACAAACGACA
    ACTAAGCGCA TAANATGATT TCTTCTCCAG CTTCGTATGG TGGGGGCAAT
    ACATTGTGCA CATCTGCNAA CACATCTTCG TCTCCGCTCT NTGGACTCCC
    AGATATGGGT GAATCTAANA CACAGTCCGG GATCGCCCTC AAGCT
  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23453025 [Map]; Strand: c
      • AT3G63520.1 - [+] show detail - carotenoid cleavage dioxygenase 1
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 11-5895-1 - 3-prime edge
    ATCTCAGTCC ATCCTAGACC CTCCAAGGGT TTCTCCTCGA NGCT

AT3G63520.1

Model type
Protein coding
Short Description
carotenoid cleavage dioxygenase 1
Curator Summary
Encodes a protein with 9-cis-epoxycarotenoid dioxygenase activity. The enzyme was shown to act on a variety of carotenoid including β-carotene, lutein, zeaxanthin, and all-trans-violaxanthin. When those compounds are used as substrates, the major reaction product detected is a C14 dialdehyde: 4,9-dimethyldodeca-2,4,6,8,10-pentaene-1,12-dial. The enzyme did not cleave as efficiently carotenoids containing 9-cis-double or allenic bonds.
Computational Description
carotenoid cleavage dioxygenase 1 (CCD1); FUNCTIONS IN: 9-cis-epoxycarotenoid dioxygenase activity; INVOLVED IN: response to water deprivation, carotene catabolic process, xanthophyll catabolic process, carotenoid catabolic process; LOCATED IN: plasma membrane, vacuole, cytoplasm; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Carotenoid oxygenase (InterPro:IPR004294); BEST Arabidopsis thaliana protein match is: nine-cis-epoxycarotenoid dioxygenase 4 (TAIR:AT4G19170.1); Has 2926 Blast hits to 2896 proteins in 500 species: Archae - 16; Bacteria - 808; Metazoa - 317; Fungi - 194; Plants - 866; Viruses - 0; Other Eukaryotes - 725 (source: NCBI BLink).
Link
InterPro Scan - TAIR