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11-5923-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 461482 [Map]; Strand: c
      • AT1G02310.1 - [+] show detail - Glycosyl hydrolase superfamily protein
        Distance: -786; Region: promoter
      • AT1G02320.1 - [+] show detail - unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BL...
        Distance: -346; Region: promoter
    Flanking Genome Sequence: 11-5923-1 - 5-prime edge 
    GGGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGNGATTTT 
    CCCATCCTAC TTTCATCCCT TTAGGAGACC CGGGAAGAGT TAAAAGTACA 
    TCTGATATCT CTCGAATCAA TTG

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 461473 [Map]; Strand: c
      • AT1G02310.1 - [+] show detail - Glycosyl hydrolase superfamily protein
        Distance: -777; Region: promoter
      • AT1G02320.1 - [+] show detail - unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BL...
        Distance: -355; Region: promoter
    Flanking Genome Sequence: 11-5923-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    AACAGACCCC TATGTTTGGA CTTTTATTAT TTAAATTTGT TTGGCAAATA 
    ACTATGAAAT TTGCAATGAT TAAAAATTAA TAATAGTTTC CCTATCAAAA 
    AAAAAAAAAN TNAANAATGG TNGGGCCNAA CCCNNGGNAA AGGNAATCNA 
    NCTGGGNCCN TNNTTTNTNG NNCNNANGTT TNNCTTCNNA ANTTGGGNCC 
    CTNGNNAAAC CCCNTNTCCT NGANNGGGNT GGNCNNTTGG GCCTNNCNNA 
    NCNNNCCCNN GGGGNNTTNA AAANCCCCCA NTTTTTTTTG GGGGGTTTTN 
    GGGGNAAANN CAAACCCNNG GGGNNNNTTN ACCATTTTTN TTNNNAAGGG 
    GAAAAAAACN NNTTTNTTTT TNCCANGNNG GGNTAAAGGG CNNTANCNNC 
    NCCAANGGGN AANNANGGNC AAAAANNGGG GGNCCTATTT TTTTNGGNAA 
    ANCNTTTTNN TTCCCTTANG GGCCAANGNT TTNCCTTTCA AAANCCAACC 
    CNNTANGGGC AAATTNAAAA CCCNCCCNAG NGGNGTCCCT TCAANTGGGC 
    NNNTTGGGTN ANANCTTTNN AANCNCCTNA NNTTTNGNAN NCNCCNTTTN 
    CNTNTAANCT TTNNNACNAA AAATNNGTTT TTTTTTNAGG ANGNGNNNNA 
    AANTNACNNN NNGGGGGGCG GGANNCCCCC GGNNNCCTNN A

AT1G02310.1

Model type
Protein coding
Short Description
Glycosyl hydrolase superfamily protein
Computational Description
Glycosyl hydrolase superfamily protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 5 (InterPro:IPR001547), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolase superfamily protein (TAIR:AT5G66460.1); Has 762 Blast hits to 752 proteins in 193 species: Archae - 9; Bacteria - 223; Metazoa - 4; Fungi - 190; Plants - 306; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G02320.1

Model type
Protein coding
Computational Description
unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).
Link
InterPro Scan - TAIR