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11-5925-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 18110849 [Map]; Strand: w
      • AT4G38780.1 - [+] show detail - Pre-mRNA-processing-splicing factor
        Distance: 0; Region: exon1 (CDS)
      • AT4G38790.1 - [+] show detail - ER lumen protein retaining receptor family protein
        Distance: -512; Region: promoter
    Flanking Genome Sequence: 11-5925-1 - 5-prime edge 
    TGGCATGTCC TCCTTCTGAG TTTCCACGAA CCCAAACTTC CTCTTGTCGC 
    CGTACCGTTT GGAATTTAGC TGCATCCATG TTCTCGCCTT CTTCTCAAGC 
    T

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 18110779 [Map]; Strand: w
      • AT4G38780.1 - [+] show detail - Pre-mRNA-processing-splicing factor
        Distance: 0; Region: intron1 (CDS)
      • AT4G38790.1 - [+] show detail - ER lumen protein retaining receptor family protein
        Distance: -582; Region: promoter
    Flanking Genome Sequence: 11-5925-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    TGCACCTGAG CACGTTAGGA AAATCATCAG GCGAGTTTCT AATTTTTCAA 
    TTTCGATTTC GAAATCCAGT TGACTGGGAA ACGAATCTGG TCCAATTTCT 
    TTGTATTATT AGGTTTGGGT TAAGTTAGAT TGAAACTTGA CTCTGCGTTT 
    TGATTCAGGG ATCATGGTGA TATGTCATCA AAGAAACATC GACTTGATAA 
    ACGTGTATAT CTTGGAGCAC TTAAGTTCGT TCCTCACGCA GTTTTCAAGC 
    TCCTGGAGAA TATGCCTATG CCCTGGGAAC AGGTAATTAT TCACTTAGTG 
    ATCTATATCT CGCTTTAGTT GTTCTCCTGC TCTGCTCAAA ATTTTGAACT 
    CAGATATTTT CCAGGTCCGG GACGTGAAGG TCTTGTACCA CATCACTGGA 
    GCTATTACAT TTGTGAACGA AGTACGATGG GTTGTGGAAC CTATTTACAT 
    GGCTCAGGTG GGTGAATAAT CTCCCTCTCT CTTCTTTTGT GTCTGNGCAT 
    TTGTGAATTT GTGAGACATG TTTTCTANTG ATGATTCTTT CGTTTGCANN 
    GGGGTTCTAT GTNGGATAAT GATGANAAGG GANAAGAGGG ATCGNCGNCA 
    TTTCAANAGA ATGCGGGTTN CCCCNTTNGA TGATGANGAG CCCNNNNTAN 
    ACTATGCNNG AAACCNGNNG GACNNNNATN CTNTNAAGCA NTNNNNTGGA 
    CCTNNATAAN AAAAANAT

AT4G38780.1

Model type
Protein coding
Short Description
Pre-mRNA-processing-splicing factor
Computational Description
Pre-mRNA-processing-splicing factor; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: nuclear mRNA splicing, via spliceosome; LOCATED IN: spliceosomal complex; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Mov34/MPN/PAD-1 (InterPro:IPR000555), Pre-mRNA-processing-splicing factor 8, U5-snRNA-binding (InterPro:IPR019581), Pre-mRNA-processing-splicing factor 8 (InterPro:IPR012591), Pre-mRNA-processing-splicing factor 8, U6-snRNA-binding (InterPro:IPR019580), PROCN (InterPro:IPR012592), PRP8 domain IV core (InterPro:IPR021983), PRO, C-terminal (InterPro:IPR012984), RNA recognition motif, spliceosomal PrP8 (InterPro:IPR019582); BEST Arabidopsis thaliana protein match is: Pre-mRNA-processing-splicing factor (TAIR:AT1G80070.1); Has 803 Blast hits to 702 proteins in 309 species: Archae - 0; Bacteria - 0; Metazoa - 318; Fungi - 227; Plants - 60; Viruses - 0; Other Eukaryotes - 198 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G38790.1

Model type
Protein coding
Short Description
ER lumen protein retaining receptor family protein
Computational Description
ER lumen protein retaining receptor family protein; FUNCTIONS IN: ER retention sequence binding, receptor activity; INVOLVED IN: protein retention in ER lumen, protein transport; LOCATED IN: integral to membrane; CONTAINS InterPro DOMAIN/s: ER lumen protein retaining receptor (InterPro:IPR000133); BEST Arabidopsis thaliana protein match is: ER lumen protein retaining receptor family protein (TAIR:AT2G21190.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR