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11-5929-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 22144648 [Map]; Strand: w
      • AT5G54510.1 - [+] show detail - Auxin-responsive GH3 family protein
        Distance: -10970; Region: intergenic
      • AT5G54520.1 - [+] show detail - Transducin/WD40 repeat-like superfamily protein
        Distance: 1866; Region: intergenic
    Flanking Genome Sequence: 11-5929-1 - 5-prime edge 
    CTTAAAAAGG GATATATGAG GTCCAAGAAG ACAATAAAAT CGCATAATTT 
    TTTGAAAAGG TNGGGTTTGT CGAAAATTTT TAATTTATTT TTGGGGGATG 
    ATAGATAACT TGGTCATTTT TACATAGTTT TGGGAGGATA TAATTTTTTT 
    TTTNGGGTNG GAGGNTNTTA TTTTNTNAAN CCCAAAACTG GTTTCCCANA 
    ANNGNTCNAG GANGGCNGNA CAAATNTTTT AAAAGGGNNA AAANTTNCCA 
    AANGGGCCCC GGGNNTTTTT ANCANNTTTT GGGGGGGANN CAAATTTTNC 
    NAGGGGGCCC CCTNNAATTT TTTTTNACCC CCCCCCCNAT TTNNAAANGG 
    GGGGGCNNNN TTNGGNCCCN NNCNNNNCCC CTTTTAANAT TTTTNGNNNN 
    CCNNCCTTNG NTNGGGGGNA AANAANTTNN CCCCCCNGGG GGGNGGANNN 
    CNCCCCNCCN CCCTNNNNAA AAAAAAAAA

AT5G54510.1

Model type
Protein coding
Short Description
Auxin-responsive GH3 family protein
Curator Summary
Encodes an IAA-amido synthase that conjugates Ala, Asp, Phe, and Trp to auxin. Lines overexpressing this gene accumulate IAA-ASP and are hypersensitive to several auxins. Identified as a dominant mutation that displays shorter hypocotyls in light grown plants when compared to wild type siblings. Protein is similar to auxin inducible gene from pea (GH3).
Computational Description
DWARF IN LIGHT 1 (DFL1); FUNCTIONS IN: indole-3-acetic acid amido synthetase activity; INVOLVED IN: auxin homeostasis, response to auxin stimulus, auxin mediated signaling pathway, unidimensional cell growth; LOCATED IN: chloroplast, cytoplasm; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: GH3 auxin-responsive promoter (InterPro:IPR004993); BEST Arabidopsis thaliana protein match is: Auxin-responsive GH3 family protein (TAIR:AT4G27260.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G54520.1

Model type
Protein coding
Short Description
Transducin/WD40 repeat-like superfamily protein
Computational Description
Transducin/WD40 repeat-like superfamily protein; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT1G10580.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR