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11-5945-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 2945235 [Map]; Strand: w
      • AT3G09590.1 - [+] show detail - CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 ...
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 11-5945-1 - 5-prime edge 
    GGGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCCA TTCAGGTGGG CCTTACGGTG AGAACATTTT 
    CTGGCACCGG CGTAAGAAGA CGTGGTCGCC GGAGAAAGTG GTGACGAGAT 
    GGTTTGAGGA AAGGTTTAAC TACGACGTGA AAACAAACAC NGTGCGCACC 
    NGGGAAAGAT GTGCNGGCCA TTACACGCAG ATGGTGTGGA GAGAGACCAC 
    AGCCGTTGGA TGCGCACGTG TGAAATGCCA TAACGGTCGT GGCTATCTTG 
    TGGTGTGTGA ATATGATCCA CGCGGGAATT ACGAAGGTGA AAGACCATTT 
    TGATCAAAAC AGTTAAAATG AAAAAATTGT TAGAGATTCA AAATATTTTT 
    TCTTCTTCTA AAGTAATGAA GATGGTATAT TATTCTTGGT CCTTACATAT 
    ATACAGCCAT GTATTGAAGA GGTATAAATT CAAATGGTTC GGAATCTTTT 
    AATTTTACTA TATTAAAGAT CAATAATAAA AAAAAACGTC NACAGCAGGG 
    TTCGAACCTG CGCGGGCGAA GCCCAATANA TTTCAAGTCT ATCTCCTTAA 
    CCACTCGGAC ATTTCGACTT GTTGTATTTG TTTCGTAAGA TTTGANTNCA 
    AAACCNAATT ACCANNNNGG GCCGTNAACC ACNCNTGCCC NTTTA

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 2945180 [Map]; Strand: w
      • AT3G09590.1 - [+] show detail - CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 ...
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 11-5945-1 - 3-prime edge 
    AAATCATACT GCAATCGGAC TTACGTTGTT TAGCCCATTT ATCAGCGAAT 
    CGGGCCAGGT CTCTGTCCCA TCCGAGCGTT GGCACGCCTG AAGAAACACG 
    TGCATCGTTG TGCGCTTGTA GAAATTCTCT CGACAGTTTT GCTCTTCTCG 
    CTCTGTTTAC CAAACGCGCC GCCGTGTTCA CCGCGTCGGG GATGGAGGTT 
    CCGAGGACGG AGGGATGACC GGAAAAGAGA AGGAAGAGAA GAAGAAGACA 
    TGATGATGGA TGAGACAACG TTACAGACAT CTCCACGTCT CTGTATAATT 
    TTGTCTCTCA TCATGATTCC TCTGTTTCTA AGGGAGTTTT TTTTGTTACT 
    TTTGTTCAGT TAGAGATTTT TCCATTTTCT GACATTTTAA CAAATTTTCC 
    TGATTCTGTN GTTTCATATC AAACAATTCT TATTGGTGAT GATGAGAAAA 
    CTACCGTATA TTTTTAGATT AAAAAAACGA AATTATTAAG GTTGTTATAC 
    TTTTCACANC CCNNCNNNNG ATNANANGAA AAACANTTCC GTCAACAGCA 
    NGATTCNAAC CTGCNCGGGC AAAGCCCAAT TGATTTCNAG TNAATNTCCT 
    TAACCCNNNG ACATATNGAC TTTNGCTCAT NGGNNNNTNC TNTNTNNTNT 
    NTNTNCTNNN ANNTTNTNNN NNCCNNNNNN NNCNNNCNNN NNNAAANNTN 
    NNNNNNGGGN NNNNNANNNN NCTNNNC

AT3G09590.1

Model type
Protein coding
Short Description
CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein
Computational Description
CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Allergen V5/Tpx-1 related, conserved site (InterPro:IPR018244), Allergen V5/Tpx-1 related (InterPro:IPR001283), Ves allergen (InterPro:IPR002413), SCP-like extracellular (InterPro:IPR014044); BEST Arabidopsis thaliana protein match is: CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein (TAIR:AT5G02730.1); Has 3024 Blast hits to 2931 proteins in 377 species: Archae - 0; Bacteria - 64; Metazoa - 1633; Fungi - 327; Plants - 888; Viruses - 0; Other Eukaryotes - 112 (source: NCBI BLink).
Link
InterPro Scan - TAIR