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11-6000-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 28569747 [Map]; Strand: w
      • AT1G76135.1 - [+] show detail - MIR394B; miRNA
        Distance: 819; Region: intergenic
      • AT1G76140.1 - [+] show detail - Prolyl oligopeptidase family protein
        Distance: -1383; Region: intergenic
    Flanking Genome Sequence: 11-6000-1 - 5-prime edge 
    GATGTAAGTG ATCTAAGCTC AGTATTTTCA ATTGAGGTAT ATATATGCTG 
    AGTTATTGTT GTCCTTGCGC TTATTTTGAT ATTATAGGTA CTTTGTTTTT 
    TTCTCTTACA TTTATAGTTA CNGTTATAGT CTTATAGACT ATTCCCACAT 
    TTTTGTGTTT ATTTATATCG GTTGTTGACT AATTAGGTTT TAGATGGTAC 
    CAAAATGATT TGCAATTCTA TGTGGAAATA TGAAAGCAAA ACAAGTTTAC 
    AATACGACTT TTGCCAAGCT CTTAGCATTG TTACGATTAT TGGATTCTAA 
    CGTTTTTTTC TTCTTTAGGT AAAATGAGGA TTTTAATGTT GAGAAAGTAA 
    GCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 28569631 [Map]; Strand: w
      • AT1G76135.1 - [+] show detail - MIR394B; miRNA
        Distance: 703; Region: intergenic
      • AT1G76140.1 - [+] show detail - Prolyl oligopeptidase family protein
        Distance: -1499; Region: intergenic
    Flanking Genome Sequence: 11-6000-1 - 3-prime edge 
    CTTACATCAA ATACATCTAT AGAAACATGT GAGTGTGACT ATACAGAAAA 
    TGTATACATT CCGACTATAA CAAAAGAAAA CGTCATAATA ATGCCTAAGA 
    AAAATACTCC ATTTTAAGAT TGAACTCGAT ATTTCTCGAA CCATTTATAG 
    GATTGAACAC AACTCATCAG ATAATAAAGA AACAAATATA CTCCTATATA 
    AACAAACAAA AACTCACTCT TCCTATATAG TATATAGATT CAAATTAAAA 
    AAAAAAAAAN NNNNNNCCNT TTNNNACCCC CGGGGGGGGN CNCCCNNCCC 
    NNAANGGGGN NNNNAAATTN CCNTTTTTNN NNNNNNNTTN CCCNNNNNNN 
    TNAANNCCCC NGGCCCCNGG GGGGGNNANG GGGGCCCNTT TTTTTNAAAA 
    AAAANTNCCC CTNCCNAAAN NNNGGAAANG NTTAAANCCC CCCCCCCNNN 
    TNNAAANNCC CNNTTNNGNN NCCCCGGGGG NNTTNAAAAA ANNNNNNNGG 
    NCCCCNNANG NNGGGNTNNC CCNCCGGGGG NGGGANNCCC CGGGGGGNCT 
    TTTNA

AT1G76135.1

Model type
miRNA
Short Description
MIR394B; miRNA
Curator Summary
Encodes a microRNA that targets one member of the F-box family. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UUGGCAUUCUGUCCACCUCC. It targets F-box protein AT1g27340.
Link
InterPro Scan - TAIR

AT1G76140.1

Model type
Protein coding
Short Description
Prolyl oligopeptidase family protein
Computational Description
Prolyl oligopeptidase family protein; FUNCTIONS IN: serine-type peptidase activity, serine-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S9, prolyl oligopeptidase, catalytic domain (InterPro:IPR001375), Peptidase S9A, oligopeptidase, N-terminal beta-propeller (InterPro:IPR004106), Peptidase S9A, prolyl oligopeptidase (InterPro:IPR002470); BEST Arabidopsis thaliana protein match is: Prolyl oligopeptidase family protein (TAIR:AT1G20380.1); Has 8127 Blast hits to 8050 proteins in 1368 species: Archae - 105; Bacteria - 3923; Metazoa - 339; Fungi - 43; Plants - 244; Viruses - 0; Other Eukaryotes - 3473 (source: NCBI BLink).
Link
InterPro Scan - TAIR