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11-6010-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 3280302 [Map]; Strand: c
      • AT4G06517.1 - [+] show detail - transposable element gene
        Distance: -199; Region: promoter
    Flanking Genome Sequence: 11-6010-1 - 5-prime edge
    NNNTNGNTGG GGGGGGGGGN TTNTNTNNAT TTTNTNTNTT NTTTNNNNNN 
    NNCCTCGAGC NTGTCANNNA CGNGNCTGGC GGTTCGGTGC GCTGNGGGAA
    TTTNCNCATN CTNNTTTGNT CCCTGAATGG CGANGTCTAG TGAACGGCGA
    GAAGCTCCGG CGAANTCTAN TTGGCTCACG AGAACGAGAG AGAGAAACTC
    TGGCCGTTTG TCGAAAATCG AATGAAGAGC TTCTTTGTCC AAATTGCNAT
    GTGGTCNAGT GAATGGTGGA AGCCNGANAT GANGTCTNAG TATTAGGTCN
    NGTGAGAAGG ANACGANNGA TGANACAAGT GNANNAT
  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 8518520 [Map]; Strand: w
      • AT3G23660.1 - [+] show detail - Sec23/Sec24 protein transport family protein
        Distance: -730; Region: promoter
      • AT3G23660.2 - [+] show detail - Sec23/Sec24 protein transport family protein
        Distance: -730; Region: promoter
      • AT3G23670.1 - [+] show detail - phragmoplast-associated kinesin-related protein, putative
        Distance: -644; Region: promoter
      • AT3G23670.2 - [+] show detail - phragmoplast-associated kinesin-related protein, putative
        Distance: -649; Region: promoter
    Flanking Genome Sequence: 11-6010-1 - 3-prime edge
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    AGATAGGATT GCCTCCAAGT TGGCATCAGA TTCTGATCTT TTTATCGACT
    TTACCAAAAC CATGCGAGGC TCACTCATGC ATGATTCAAA TAATCCTAGG
    AAAATCAGAA GAAGTCGACA CAACATTCTT GGAAGCAATT AAGCAAAGGC
    TCACCGATAT TAGAACCGAT AAATTCGGTT ATCTCATCGT GTTATATTTC
    ATACAAGTTT TCAAGAAAAG AAGACCTTAT TCTCAAGTGA AGTATGAAAT
    CCAAAAACTA AATCTCTCTC CCTTTCAAAG GAAACACTGG GAAGTGGGAA
    ACACATTGGT CCAACGAGCG TATTACGGAC ACCATCGCAT GTATGCTTCA
    ATGGCATTGC ATCGAGCTTT CGTATCATAA ACATGGGAGA AACGTTGTGG
    AGAAGCT

AT3G23660.1

Model type
Protein coding
Short Description
Sec23/Sec24 protein transport family protein
Computational Description
Sec23/Sec24 protein transport family protein; FUNCTIONS IN: transporter activity, zinc ion binding; INVOLVED IN: intracellular protein transport, transport, ER to Golgi vesicle-mediated transport; LOCATED IN: COPII vesicle coat; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sec23/Sec24, helical domain (InterPro:IPR006900), Sec23/Sec24 beta-sandwich (InterPro:IPR012990), Sec23/Sec24, trunk domain (InterPro:IPR006896), Zinc finger, Sec23/Sec24-type (InterPro:IPR006895), Gelsolin domain (InterPro:IPR007123); BEST Arabidopsis thaliana protein match is: Sec23/Sec24 protein transport family protein (TAIR:AT4G14160.2); Has 1418 Blast hits to 1403 proteins in 244 species: Archae - 0; Bacteria - 0; Metazoa - 517; Fungi - 392; Plants - 312; Viruses - 0; Other Eukaryotes - 197 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G23660.2

Model type
Protein coding
Short Description
Sec23/Sec24 protein transport family protein
Computational Description
Sec23/Sec24 protein transport family protein; FUNCTIONS IN: transporter activity, zinc ion binding; INVOLVED IN: intracellular protein transport, transport, ER to Golgi vesicle-mediated transport; LOCATED IN: COPII vesicle coat; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sec23/Sec24, helical domain (InterPro:IPR006900), Sec23/Sec24 beta-sandwich (InterPro:IPR012990), Sec23/Sec24, trunk domain (InterPro:IPR006896), Zinc finger, Sec23/Sec24-type (InterPro:IPR006895), Gelsolin domain (InterPro:IPR007123); BEST Arabidopsis thaliana protein match is: Sec23/Sec24 protein transport family protein (TAIR:AT4G14160.2).
Link
InterPro Scan - TAIR

AT3G23670.1

Model type
Protein coding
Short Description
phragmoplast-associated kinesin-related protein, putative
Curator Summary
Microtubule motor kinesin PAKRP1L/Kinesin-12B. Together with PAKRP1/Kinesin-12A, serve as linkers of the plus ends of antiparallel microtubules in the phragmoplast.
Computational Description
KINESIN-12B; FUNCTIONS IN: microtubule motor activity, plus-end-directed microtubule motor activity; INVOLVED IN: phragmoplast assembly, microgametogenesis; LOCATED IN: chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Kinesin, motor region, conserved site (InterPro:IPR019821), Kinesin-related protein (InterPro:IPR010544), Kinesin, motor domain (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: phragmoplast-associated kinesin-related protein 1 (TAIR:AT4G14150.1); Has 21997 Blast hits to 17774 proteins in 804 species: Archae - 113; Bacteria - 909; Metazoa - 11671; Fungi - 2303; Plants - 2314; Viruses - 18; Other Eukaryotes - 4669 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G23670.2

Model type
Protein coding
Short Description
phragmoplast-associated kinesin-related protein, putative
Curator Summary
Microtubule motor kinesin PAKRP1L/Kinesin-12B. Together with PAKRP1/Kinesin-12A, serve as linkers of the plus ends of antiparallel microtubules in the phragmoplast.
Computational Description
KINESIN-12B; FUNCTIONS IN: microtubule motor activity, plus-end-directed microtubule motor activity; INVOLVED IN: phragmoplast assembly, microgametogenesis; LOCATED IN: chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Kinesin, motor region, conserved site (InterPro:IPR019821), Kinesin-related protein (InterPro:IPR010544), Kinesin, motor domain (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: phragmoplast-associated kinesin-related protein 1 (TAIR:AT4G14150.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G06517.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
pseudogene, hypothetical protein
Link
InterPro Scan - TAIR