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11-6024-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 551532 [Map]; Strand: c
      • AT1G02580.1 - [+] show detail - SET domain-containing protein
        Distance: 2330; Region: intergenic
      • AT1G02590.1 - [+] show detail - Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding protein
        Distance: 606; Region: intergenic
    Flanking Genome Sequence: 11-6024-1 - 5-prime edge
    GTTTCTTCTT TATCAAGTTC TATTCCTTTC TTACAAAGAG AACTCACCGA 
    TCACGAGAAC GTCAAAAGAT CGATGACCAT CCGCGCCAAT GTCATGGGAT
    CACCAGNNGG GGCNGNNGAC CACGCCGGGC CCTATNGGGN GTNGNATTAC
    AGGGGGGGGG GGGGNCNCCC NNGGGGGCCG GGNAAAAAGG NGGGNNAANG
    GGGGGGGGGN NNNCCNCCNC NNGGGC

AT1G02580.1

Model type
Protein coding
Short Description
SET domain-containing protein
Curator Summary
Encodes a putative transcription factor MEDEA (MEA) that negatively regulates seed development in the absence of fertilization. Mutations in this locus result in embryo lethality. MEA is a Polycomb group gene that is imprinted in the endosperm. The maternal allele is expressed and the paternal allele is silent. MEA is controlled by DEMETER (DME), a DNA glycosylase required to activate MEA expression, and METHYLTRANSFERASE I (MET1), which maintains CG methylation at the MEA locus. MEA is involved in the negative regulation of its own imprinted gene expression; the effect is not only allele-specific but also dynamically regulated during seed development. In the ovule, the MEA transcripts are accumulated at their highest level before fertilization and gradually decrease after fertilization
Computational Description
MEDEA (MEA); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), SET domain (InterPro:IPR001214); BEST Arabidopsis thaliana protein match is: SET domain-containing protein (TAIR:AT4G02020.1); Has 4870 Blast hits to 4762 proteins in 465 species: Archae - 0; Bacteria - 401; Metazoa - 1924; Fungi - 484; Plants - 1009; Viruses - 0; Other Eukaryotes - 1052 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G02590.1

Model type
Protein coding
Short Description
Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding protein
Computational Description
Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding protein; FUNCTIONS IN: oxidoreductase activity, aldehyde oxidase activity; INVOLVED IN: oxidation reduction; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding (InterPro:IPR008274); BEST Arabidopsis thaliana protein match is: aldehyde oxidase 4 (TAIR:AT1G04580.1); Has 1946 Blast hits to 1943 proteins in 514 species: Archae - 0; Bacteria - 697; Metazoa - 537; Fungi - 88; Plants - 177; Viruses - 0; Other Eukaryotes - 447 (source: NCBI BLink).
Link
InterPro Scan - TAIR