1. Home
  2. Mutant Lines
  3. 11-6040-1

11-6040-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 192738 [Map]; Strand: c
      • AT2G01430.1 - [+] show detail - homeobox-leucine zipper protein 17
        Distance: -2369; Region: intergenic
      • AT2G01440.1 - [+] show detail - DEAD/DEAH box RNA helicase family protein
        Distance: 963; Region: intergenic
    Flanking Genome Sequence: 11-6040-1 - 5-prime edge 
    CCCAAGACGA ATGATTTGCT CATCGGAAGC TACAAAAGCT GTTTGTACAA 
    ATTGGGGATC ATTCTCTTTT TCGTTTTCTA TAATACCTAA TATTTTATAC 
    TATGCTCTTT CAAATTATTT GCTCCTTCCG TTTCCATGAC ACTAATAATT 
    GAAGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 192812 [Map]; Strand: c
      • AT2G01430.1 - [+] show detail - homeobox-leucine zipper protein 17
        Distance: -2443; Region: intergenic
      • AT2G01440.1 - [+] show detail - DEAD/DEAH box RNA helicase family protein
        Distance: 889; Region: intergenic
    Flanking Genome Sequence: 11-6040-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATGGG 
    ACGTACACAG ATTTAACTTC CGACATCGCT ATCTTCTAAA GTCAAAAAAG 
    TTTCTGTCTT GTCTCTTAAT CATTTTCTTT CTACTCTTTG GATC

AT2G01430.1

Model type
Protein coding
Short Description
homeobox-leucine zipper protein 17
Computational Description
homeobox-leucine zipper protein 17 (HB17); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Leucine zipper, homeobox-associated (InterPro:IPR003106), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: homeobox-leucine zipper protein 18 (TAIR:AT1G70920.1); Has 8030 Blast hits to 8017 proteins in 519 species: Archae - 0; Bacteria - 0; Metazoa - 5631; Fungi - 276; Plants - 1985; Viruses - 4; Other Eukaryotes - 134 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01440.1

Model type
Protein coding
Short Description
DEAD/DEAH box RNA helicase family protein
Computational Description
DEAD/DEAH box RNA helicase family protein ; FUNCTIONS IN: ATP-dependent DNA helicase activity, helicase activity, nucleic acid binding, ATP-dependent helicase activity, ATP binding; INVOLVED IN: DNA repair, DNA recombination; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), DNA helicase, ATP-dependent, RecG (InterPro:IPR004609), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEAD/DEAH box helicase, putative (TAIR:AT3G02060.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR