Home
Mutant Lines
11-6045-1

11-6045-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 5; Position: 20071982 [Map]; Strand: w
- AT5G49480.1 - [+] show detail - Ca2+-binding protein 1
  Distance: 344; Region: intergenic
- AT5G49490.1 - [+] show detail - AGAMOUS-like 83
  Distance: -3346; Region: intergenic

GGGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
CCCATCCTAC TTTCATCCCA TATCCCGGAA CATTAGTTTG ATAAAACAAA 
AGAAAGTGAA AAGGCAATGG TACTTTCTCA TTGGTTGTAT AGAGAGAAAG 
GACAGAAAAA CACATTTAAC TGTGTTCTAC TTCCTTTGCT TACTCTCACT 
TTTCACAATT CAATCTACGT CTGCCATGGC TTCCAGTGAT GTTCTTCCTC 
GATTCTAATA GATTTATTGG TATCCGCATT CAGGCGTGAA GGGCAAGGAA 
GGATCGTGCT ATTTAATCAT CTGACTCGAC CGAATATGTT AACGCATGTT 
GTGTTTGTAT TTTGGTGTTT TGTGTTTATC TTTTTTGCTT GAAGATAGAA 
TCATTTGATT TATCAAATAT AGAACATACA CTTTCAGCTA AGCCATATAT 
TCATACATAA TTTTTGTCGA TCGATTACCA ATATTAGTTA ATGGGGATGT 
TGAACCAAGC T

3 prime edge [+] show sequence

Chromosome: 5; Position: 20071960 [Map]; Strand: w
- AT5G49480.1 - [+] show detail - Ca2+-binding protein 1
  Distance: 322; Region: intergenic
- AT5G49490.1 - [+] show detail - AGAMOUS-like 83
  Distance: -3368; Region: intergenic

ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCG 
CCCATATAAA TATTTGATTT TTATTTATTT TAACTTTAAA AATCATAGAC 
GGCGAAATCT ACCCATCAAG ATAGAACCGT TTTCATCAAA AACTTTGATT 
CATCTACATG TTCATCGCAA CACTAAACAA AGGAAGACCT ACTCAAAGTA 
CTTTTACGAA TCTAAAATAA AAATTACTAC AAACATGAAA GTTCTCTCCT 
TCGAATAGGC ATTGGAAGAG TGGTTGCATT GAAAAGATAT ATGGTGCCAA 
ATGCCAGTTA AGTGATTTAT GGGGTTGATA TATTTGGATT CAGAATAGAA 
GATGAAGAGG CATTTGTACT CTCTAGAATG TTTTCAATGT TTGGTATTAA 
ATTTGGGAAA ATAGTCGAAG AAAGCT

AT5G49480.1

Model type: Protein coding
Short Description: Ca2+-binding protein 1
Curator Summary: AtCP1 encodes a novel Ca2+-binding protein, which shares sequence similarities with calmodulins. The expression of AtCP1 is induced by NaCl.
Computational Description: Ca2+-binding protein 1 (CP1); FUNCTIONS IN: calcium ion binding; INVOLVED IN: hyperosmotic salinity response; LOCATED IN: cytosol; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: calmodulin 1 (TAIR:AT5G37780.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G49490.1

Model type: Protein coding
Short Description: AGAMOUS-like 83
Computational Description: AGAMOUS-like 83 (AGL83); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: central cell, female gametophyte; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100); BEST Arabidopsis thaliana protein match is: MADS-box transcription factor family protein (TAIR:AT5G49420.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link: InterPro Scan - TAIR