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11-6076-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 1071863 [Map]; Strand: w
      • AT4G02430.1 - [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
        Distance: 0; Region: exon12 (3UTR)
      • AT4G02430.2 - [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
        Distance: 0; Region: exon12 (3UTR)
      • AT4G02440.1 - [+] show detail - F-box family protein
        Distance: -618; Region: promoter
    Flanking Genome Sequence: 11-6076-1 - 5-prime edge 
    TGTCTAGCTA ATTAAATTCT CATCATCTGG ATTGAATTGT GTGTGTTGCA 
    GGTTCAGAAG GAAGCAAGTA AGAGCCCTAG CAAGCAGCTG AGCCCAGCGA 
    AGAGCCCTAT CTGTGGGAGG AGCAAGAGCA GAAGCAGGAG TCCATCTCGG 
    TAATGCACAC TCTTTTTCAC TTGCTTGGAA CATTCTCGCT CTTTCTCTGA 
    ACCTCTTTCC AACTGTTCTA CAGGTAAAGA AACATCTCAC TATCAGGTAA 
    AAAAGCTGGG TCTGTTGGAA GATTCTCATA AAGATGATCT CTCTTATGTA 
    TGAGAAGTTG AAAACCTAGT TGTGTATTTC TGGGGTACCT CATGAGATTT 
    TAACTCTCTT TTTTTTTTTT TTNAAACTNT TCCNNGNANC TTTGNNTNNN 
    GGATTNTNNA AACNNTNTNN CCTTTTTNTN NCCTGGGGTT NNCNCNNGGN 
    AANNANNNAN CNGGGNCNTN ATNANTTTNN NACCAAACCC CACCNGNTTT 
    NTNNNACTGG CTAANNTANT NGGGGCTNAA ANCAANCCTT CAAAANTTNN 
    GAAATCCCAA NNTTATTTNA AANGCNCANA ATNGGATTTT AAAATTTGGA 
    AAACGTNCNC ANTAANNGAC CCTAAAAANA CNTGGNCTTN GAANTNTTTT 
    NNANNCCCGG NCCCTTTACT TTTTATTTNA NCCCNNNNAA TNNTTTTTNA 
    AAAGCN

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 1071730 [Map]; Strand: w
      • AT4G02430.1 - [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
        Distance: 0; Region: intron11 (3UTR)
      • AT4G02430.2 - [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
        Distance: 0; Region: intron11 (3UTR)
      • AT4G02440.1 - [+] show detail - F-box family protein
        Distance: -751; Region: promoter
    Flanking Genome Sequence: 11-6076-1 - 3-prime edge 
    GCTAGACATA GATCTTGTCT TTTGGATAGT ATGAATCGAA AACCGAAAAT 
    ATAGAGTAAA AACTGTATTA GAGATAGATG ACTTACAGAG GGTAGAGGAG 
    ATCTTGACCT TGAACGAGAT CTGCAAAAGT CCGAGAAACA AATCCAGTTT 
    TAAAAATCCA ATATTTCCGT GTTGAATAGC TGTTTCACCA AGACCCTTGA 
    TGCCTCATTC CATGTCAGAC ATCAAAACAC AATCACAAGA AGCAATAAAA 
    AACCATAACT TCGGACTATT TCTAGCAGAA AATCAAACCA ACACAAGCAT 
    GCTTTTCGTT AAAACAGATG GTAGAGATGG AGAATATCAA AGCAAATCTA 
    ATTCTTTCAA ACCCTGTGTC CAGAACAGCA TCGGTTCCAT GAGAATCCAG 
    ATCGCTTGTC GATTAGCAGG TAATGAAAAT ATCTGTCCTA GCTCGATGGG 
    TCCATTTTGA TGACACTCTA TCAATGCGAT CCAATGTCTC CAACTGTTAC 
    CCATGATATT ATCAGAAAAC GAGGATAAAA GAAAGTTTCA ATTCCAAACT 
    TGCCCATCTA AGAAAGAGCA TATACCTCTG AGACGAAACA GTTGTGTACA 
    ACCAACCAAG ATATCCATGA TCCAGATACT ATTTCCCATG TTTTAGTTGA 
    TTGTATGTAT ATCCATATCT AAGAAACAAA ACCATTCTCA ACAATAAAAT 
    TATAAAAGAC CAGACTGTCA AAGGAAAT

AT4G02430.1

Model type
Protein coding
Short Description
RNA-binding (RRM/RBD/RNP motifs) family protein
Computational Description
RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT1G02840.3); Has 29 Blast hits to 28 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G02430.2

Model type
Protein coding
Short Description
RNA-binding (RRM/RBD/RNP motifs) family protein
Computational Description
RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT1G02840.2); Has 29 Blast hits to 28 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G02440.1

Model type
Protein coding
Short Description
F-box family protein
Curator Summary
EID1 is an F-box protein that functions as a negative regulator in phytochrome A (phyA)-specific light signalling. Expressed at all stages of plant development independently of light conditions, localizes to the nucleus, and forms nuclear speckles under continuous far-red light. Forms stable dimeric and trimeric complexes with several ASK proteins and Cullin1 in yeast and in planta.
Computational Description
EMPFINDLICHER IM DUNKELROTEN LICHT 1 (EID1); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: photoperiodism, flowering, red, far-red light phototransduction, leaf development, regulation of photomorphogenesis; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 121 Blast hits to 91 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 121; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR