Home
Mutant Lines
11-6095-1

11-6095-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 5; Position: 23497473 [Map]; Strand: w
- AT5G58050.1 - [+] show detail - SHV3-like 4
  Distance: 0; Region: intron1 (5UTR)
- AT5G58060.1 - [+] show detail - SNARE-like superfamily protein
  Distance: -666; Region: promoter
- AT5G58060.2 - [+] show detail - SNARE-like superfamily protein
  Distance: -666; Region: promoter

CCTGCATTTG TGTGTAACGT ACGTACCCCA ATGGAAAAGC AAAGTCAGGA 
TACATGTAAC AAAAACAGAA TTGTCACATT TAAGAAAATT GTGAAAGAGA 
GATCTTACAG CGAGAAAAGA ACATGAATCC CCTCTCCTGC TTGTTTTCCT 
CGTTTAGTTA GAGGAAAGGA AAAAGAAGAG AAAGAGGAGA TGGGTCAAAC 
AAGGTTAATT AATGGTAAAA AAAAGTAACN TTGCTCTCAT ATCCTCCATT 
TATGGCCATT TACTCCTTTC TATTTTTATC TCTTCTTCTC CACCATTCCC 
TTCTTAACCG CTTTTTCTTT TTTTGATGCT TTCTTACATC TTCTTTGCAC 
AAATGGGTGT AACACCCCTC AGTTTTGGAC TTTGTACTAT ATTCATATGT 
CATACATGTA TGTAGTTAAA ATGACAATAT TAGAGTTTGG CATTCGGACC 
AAACCAAGTT GTCCGATCTT AACCAAACCA ATATTCCCGT TAATAAGAAA 
ACTCGATTGG CAAAAATTAA AATATTCTTT GGTTTCAGTT TTNGCCTANA 
CTTAAAATTC TTAAAAATCC AATTCTATGT TGATGGAAAA ATCTTTGATT 
CCGGGNCCAA TTTCTGCATC AANTATATGC TAAACCNAAC CGAGACTGCC 
NANATAAAAT TGGATTNGAA CCCAAAAGGT TTTTAATTTT TACTTCANCA 
NACCGAATAA GAAAAN

3 prime edge [+] show sequence

Chromosome: 5; Position: 23497382 [Map]; Strand: w
- AT5G58050.1 - [+] show detail - SHV3-like 4
  Distance: 0; Region: exon2 (CDS)
- AT5G58060.1 - [+] show detail - SNARE-like superfamily protein
  Distance: -757; Region: promoter
- AT5G58060.2 - [+] show detail - SNARE-like superfamily protein
  Distance: -757; Region: promoter

GAAAACGGTA GAGGTATTTT ACCGACCGTC AGGNTCAATC AGATAGAGAT 
GCTGAGGTTT TTCATTCTTT TCTCCCTTTT CTTACACTCT TGTGTTGCGG 
CACCCAAGAC TCCTGCTGCT GCCGCAGCTG TTCCTGCCAA GAAATGGCTT 
ACCCTTAACG GTAAGCATCC TTTTACAGAG TATGCCCATA TTGCATACTA 
CCATGTTGTT GTTGTTTTTT GTTGTTTAAT GTTAAGACTT AAGATACCAT 
GTTGTTTGTT TGTTTCTAAG AATCCGTACC TGTCTTTTGT CTTCCAGGAC 
AAGAGCCTGC CGTTGTGGCC AGAGGGGGCT TCTCGGGTCT TTTCCCTGAG 
TCAAGCATCT CTGCAAACGA CTTGGCTATT GGCACCAGCT CGCCTGGCTT 
CACAATGTTG TGCAACCTTC AGATGACTAA GGACGGTGTG GGCCTTTGCT 
TGTCANATAT CAGACTTGAC AATGCAACCC ACCATCTCCT CGGTCTTCCC 
NAANAGCCCA GAAGACCTAC AAGGTCANCG GTCAGGGACC TCAAAGGGCT 
GGTTTGTCAT TGATTACGAT GCCGACACCA TATTCAACAA GNNNCTCGGN 
NGGGCTTCTT TTTNTNTNAT TTCNTCCCTT CAATGCTTAA NCCNNCNCNN 
NAANACATTT ANCATNGNTT TNGNNTTATT TGAGCNGNTG NNTCNNTNAA 
CATTGTTCNT TTTNGCCNNN CCNTATNTAA NGGGCNAATA NTTNGGTTTA 
TTNGANAAGN AGGATNTNCN TNAGAACNCA ACCCTCC

AT5G58050.1

Model type: Protein coding
Short Description: SHV3-like 4
Computational Description: SHV3-like 4 (SVL4); FUNCTIONS IN: glycerophosphodiester phosphodiesterase activity, kinase activity; INVOLVED IN: glycerol metabolic process, lipid metabolic process; LOCATED IN: anchored to membrane; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: PLC-like phosphodiesterase, TIM beta/alpha-barrel domain (InterPro:IPR017946), Glycerophosphoryl diester phosphodiesterase (InterPro:IPR004129); BEST Arabidopsis thaliana protein match is: SHV3-like 5 (TAIR:AT5G58170.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G58060.1

Model type: Protein coding
Short Description: SNARE-like superfamily protein
Curator Summary: member of YKT6 Gene Family
Computational Description: YKT61; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: transport, vesicle-mediated transport; LOCATED IN: integral to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Longin (InterPro:IPR010908), Longin-like (InterPro:IPR011012), Synaptobrevin (InterPro:IPR001388); BEST Arabidopsis thaliana protein match is: Synaptobrevin family protein (TAIR:AT5G58180.2); Has 1443 Blast hits to 1443 proteins in 239 species: Archae - 0; Bacteria - 0; Metazoa - 389; Fungi - 302; Plants - 452; Viruses - 0; Other Eukaryotes - 300 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G58060.2

Model type: Protein coding
Short Description: SNARE-like superfamily protein
Curator Summary: member of YKT6 Gene Family
Computational Description: YKT61; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: transport, vesicle-mediated transport; LOCATED IN: integral to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Longin (InterPro:IPR010908), Synaptobrevin (InterPro:IPR001388), Longin-like (InterPro:IPR011012); BEST Arabidopsis thaliana protein match is: Synaptobrevin family protein (TAIR:AT5G58180.2); Has 1363 Blast hits to 1363 proteins in 233 species: Archae - 0; Bacteria - 0; Metazoa - 381; Fungi - 253; Plants - 448; Viruses - 0; Other Eukaryotes - 281 (source: NCBI BLink).
Link: InterPro Scan - TAIR