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11-6101-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 347275 [Map]; Strand: w
      • AT1G02000.1 - [+] show detail - UDP-D-glucuronate 4-epimerase 2
        Distance: 0; Region: exon1 (CDS)
      • AT1G02010.1 - [+] show detail - secretory 1A
        Distance: -616; Region: promoter
      • AT1G02010.2 - [+] show detail - secretory 1A
        Distance: -699; Region: promoter
    Flanking Genome Sequence: 11-6101-1 - 5-prime edge 
    GNGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTGG 
    GTACAAACCA AGCACGGATT TGCAGACTGG TCTAAAGAAG TTTGTGAGAT 
    GGTATCTTGG TTACTACAAG CAGGGGGGAA AGAAAGTTGC TGCTGCTGCT 
    TGAATATTGA TAATTCACAA GATTCTTTAG TGTATAGTGA GTGAGTGGAT 
    TGATACACAC CATAAAGAAG AGACATGATT CATTCGAGAT TATATATTCT 
    TTACATTTGT ATTCTGCTTT GTAATTTCGA TCTCTTGAGT CGAATCTCTG 
    ATATTTATTT CATAGGAAGT TCACATTAAT CTCTGTTATT CAACCGATGG 
    AGCCAGAGAG AGTAATGAAT ATGATATATA CATTATGCTA TAAAGCTGAA 
    TTAGCAAAGC ACAAAGTGAA ACAAAGTGTG ATTGAAGAAG AAAGAATGCA 
    AATTAAGTAG TGAATAAGAA AAACTGCAGG CCTTGGGACT ATCTGCATAA 
    CTAAAATATA TGGTTCAAAT CCAATCCAAT GAAGCATTTT ACCAATAAAT 
    CTAATTCTAA CTAAAGGATC AAATTCAAAG TTTTTCTTGT AAACAAACAT 
    ACGTAAAGGA GGTAAGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 347249 [Map]; Strand: w
      • AT1G02000.1 - [+] show detail - UDP-D-glucuronate 4-epimerase 2
        Distance: 0; Region: exon1 (CDS)
      • AT1G02010.1 - [+] show detail - secretory 1A
        Distance: -642; Region: promoter
      • AT1G02010.2 - [+] show detail - secretory 1A
        Distance: -725; Region: promoter
    Flanking Genome Sequence: 11-6101-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    AAACTCTCTC TGTGCCGAAC TGATATTAGC ATGTGTGAAG GGCACATCAC 
    CATTCCTCGG CAGCTTCATC ATGTTCCTCT TGGCTTTCAC TTTCAACAAT 
    CTCTCCAATA TACTCACAAG ATCAGTCACC GGCACCGGAG ATGTGTTCCC 
    CAGGTTGAAT ACCCTTAGCT GAGCCGCTCC CCGCTTCTTG CCACCACTCC 
    CTGTGCTCTT CTCCGCCGTG TCCAGAGCCC CCAAACATCC TTTCACTATG 
    TCATCGATGT ATGTGAAATC CCTAGCCACT GTTCCGTGAT TGGCTCCTTC 
    GAAGATCGAA ATAGCTTTCC CTTTGAGGAT GTCTCTGGTG AAGAAGAAGT 
    AAGCCATGTC AGGTCTTCCC CACGGCCCGT ACACCGTGAA AAACCTCAAG 
    CCGGTGAGAG AGAGCCCGTA GATGTGGTTG TAAGTGTGGG CAATCTCTTC 
    TCCAGCTTTC TTGGTCGCAG CGTANAGACT CGCAGGCTGA TCTGTTCTGT 
    CTTTCTCAGA GAAGGGGACT TTGGTGTTTA AACCGTAGAC GGAGCTAGAC 
    GATGCCCACA CGATCGCCGG CTGAGGATTA GCGGATTTAC AGACCTCGAG 
    GAGGTTAACG AAACCAGCGA TGTTGCTGNG AACGTAGGAA CCGGGGTTCT 
    CCATGGCGTN TCTGACACCA GCTTGAGCGG GNAGATGCNT GACGNGAGTG 
    AAAGGGACNA CCCTCNAAGA GCT

AT1G02000.1

Model type
Protein coding
Short Description
UDP-D-glucuronate 4-epimerase 2
Curator Summary
UDP-D-glucuronate 4-epimerase
Computational Description
UDP-D-glucuronate 4-epimerase 2 (GAE2); FUNCTIONS IN: UDP-glucuronate 4-epimerase activity, catalytic activity; INVOLVED IN: cellular metabolic process, carbohydrate metabolic process, nucleotide-sugar metabolic process, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040), Nucleotide sugar epimerase (InterPro:IPR008089); BEST Arabidopsis thaliana protein match is: UDP-D-glucuronate 4-epimerase 3 (TAIR:AT4G00110.1); Has 43438 Blast hits to 43429 proteins in 2985 species: Archae - 785; Bacteria - 25993; Metazoa - 728; Fungi - 385; Plants - 1220; Viruses - 41; Other Eukaryotes - 14286 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G02010.1

Model type
Protein coding
Short Description
secretory 1A
Curator Summary
member of KEULE Gene Family
Computational Description
secretory 1A (SEC1A); FUNCTIONS IN: protein transporter activity; INVOLVED IN: protein secretion, vesicle-mediated transport, vesicle docking involved in exocytosis; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Sec1-like protein (InterPro:IPR001619); BEST Arabidopsis thaliana protein match is: Sec1/munc18-like (SM) proteins superfamily (TAIR:AT1G12360.1); Has 1717 Blast hits to 1698 proteins in 226 species: Archae - 0; Bacteria - 0; Metazoa - 705; Fungi - 477; Plants - 219; Viruses - 0; Other Eukaryotes - 316 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G02010.2

Model type
Protein coding
Short Description
secretory 1A
Curator Summary
member of KEULE Gene Family
Computational Description
secretory 1A (SEC1A); FUNCTIONS IN: protein transporter activity; INVOLVED IN: protein secretion, vesicle-mediated transport, vesicle docking involved in exocytosis; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Sec1-like protein (InterPro:IPR001619); BEST Arabidopsis thaliana protein match is: Sec1/munc18-like (SM) proteins superfamily (TAIR:AT1G12360.1).
Link
InterPro Scan - TAIR