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11-6113-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 1234023 [Map]; Strand: c
      • AT1G04520.1 - [+] show detail - plasmodesmata-located protein 2
        Distance: 0; Region: exon4 (3UTR)
    Flanking Genome Sequence: 11-6113-1 - 5-prime edge 
    GGGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCCA TAGTTAGTGT AATTGATTGA GAAAAACAAA 
    ATTCTTTTTT GTTCACATTT TTTCATCCAC CACAAATTCC TACCTTCCAA 
    TAATCTGAAC TAATACAAAG AAGATATAAT ATAATAACAA TTTTCATGAA 
    ATTTTAAAGT TTGGACTTGG AAATTAATAG CCTCAAAGAG AGAAAAATTA 
    AACTTGTGCC TATCTCATGA GGGATTGGAC TCCTTTTGTT CTCTTCCTCT 
    CCATCTTTCA ATAGTCTGCC AAAAAAAGAT CCCAAAAAGA TATCATTGTT 
    ATGACAATTC CAAATAATCT TCCCTTTAAT ATATTCTACA TCACATGTGC 
    ATGTGTTTTG TATAATCTAT GCATGTATTT TACATGTATG TAATCAAATA 
    CTAGATGCTT ATGTATGTAA ACTATATAGT GAAGAAAATG GTACCGTCAT 
    GTTTCTTCCT CATCAAGTTT TTGGCAAAAA GCAAGCAAAT GACAAGAAAG 
    CCAACACCAG CTGCTCCTCC TACTATTATT GCCACCGTCT TCCCTGTTGC 
    TCCTGTCCAC ATTTTCATTC ATTTNNTTTT GGCNTCNNTA TTATTAATTN 
    CAATNGNACG GNGTTNATNA ATTAAGATAA AATACATCTA TTTNACTCNA 
    TTNTTNTGAN GATACTTAAA GNNCTGNNGA ANAAAATTTN GGNGGGNNAN 
    CGTNTNTTGN AGAGGNCNTN NGNG

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 1237284 [Map]; Strand: c
      • AT1G04540.1 - [+] show detail - Calcium-dependent lipid-binding (CaLB domain) family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 11-6113-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATTCA 
    GTTGCTAGAA CTTAACATAA TATCAGCTCA GGACTTGGCT CCCGTCGCAC 
    GCAAGACAAA GACTTATGCG GTTGCTTGGG TTCATTCCGA ACGTAAACTT 
    ACCACCCGTG TCGACTACAA TGGCGGAACA AACCCAACTT GGAACGACAA 
    ATTCGTATTC AGAGTCAACG AAGAATTTCT CTACGCTGAT ACTTCAGCAG 
    TGGTTATCGA AATATACGCC TTGCATTGGT TCAGAGATGT TCATGTAGGA 
    ACAGTTCGTG TCCTCATTAG CAACCTCATT CCTCCTAATC GCCGTCCAGG 
    ATACAGAACC AGCAACAATG AATATCGTCG TACCCCACCT CCAGGAATGA 
    GATTTGTTGC GCTTCAAGTT CGTCGTACTT CAGGTCGACC TCAGGGGATT 
    TTGAACATTG GTGTTGGATT AATTGATGGT TCTATGCGGA GTATGCCGCT 
    TTATACGCAT ATGGATTCAT CTGCTGTGGG ATATAGAGAT TTGCTCGGAG 
    AAGAAGATCA TCATCTACAA CATTTGCATT TAAATAGCAA CAAAGGGAGC 
    TCAAAGAATC CACAATCTCC ATCTTCTCGA CAGTACCAAT CCGTAATCTC 
    AAGGCCTGAG CTCCGTCGTA CNAAGAGCGA TACAAGTTCT ATGGTTGTTT 
    CNGATCTTNT TANCANGGCT GAACGGAGTC NTTTANCTNN TNNACAACCA 
    NCGAGTGCAN TATGANCN

AT1G04520.1

Model type
Protein coding
Short Description
plasmodesmata-located protein 2
Computational Description
plasmodesmata-located protein 2 (PDLP2); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation, plasmodesmata-mediated intercellular transport; LOCATED IN: plasmodesma; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF26 (InterPro:IPR002902); BEST Arabidopsis thaliana protein match is: plasmodesmata-located protein 3 (TAIR:AT2G33330.1); Has 1091 Blast hits to 1028 proteins in 65 species: Archae - 0; Bacteria - 64; Metazoa - 5; Fungi - 13; Plants - 1007; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G04540.1

Model type
Protein coding
Short Description
Calcium-dependent lipid-binding (CaLB domain) family protein
Computational Description
Calcium-dependent lipid-binding (CaLB domain) family protein; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: Calcium-dependent lipid-binding (CaLB domain) family protein (TAIR:AT2G33320.1); Has 556 Blast hits to 454 proteins in 75 species: Archae - 0; Bacteria - 32; Metazoa - 92; Fungi - 46; Plants - 336; Viruses - 0; Other Eukaryotes - 50 (source: NCBI BLink).
Link
InterPro Scan - TAIR