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11-6141-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 286556 [Map]; Strand: c
      • AT5G01740.1 - [+] show detail - Nuclear transport factor 2 (NTF2) family protein
        Distance: 5111; Region: intergenic
      • AT5G01747.1 - [+] show detail - MIR164/MIR164B; miRNA
        Distance: -1030; Region: intergenic
    Flanking Genome Sequence: 11-6141-1 - 5-prime edge
    GTCGTAATTA TCATTACATC AAATCCATTC CCTTTTCCTT TATCTAATTT 
    TATCCAACTA ATCACTTTTT TTCTTTCTTT TGCAAACTTA GCAGTTTATT
    TTTTCTAATT TGGTATAATT TGATAATAAA TACTCCATTA TATTTTTGAA
    CAATTTCCCT CCATTCCATC ATTCTTTCGG TCCATTTTTT AATATCAATT
    TTTCGTTTGT ACATATATAA ATTATAAATG TTAAGTTATA ACTAACTATA
    TATACGGTGA AAGCGAATTT TTCAGTAACA AGAGGAATGT ATTTGAACCA
    ACTTTGCTAT ATTCCCCATC TTGCATATAT AACAGTAAGA GATTTTTCTT
    TTTATGTAAT ACACAGACAT TTTTGTCAAA AGATTGTTCA TTGAAAACTA
    TTTTATTAGG TTATATACCC TCAGCTACCA TTGTTNGTTG CATACATTTA
    ATTCGATTCT AACTGTATAA CATTACGTTG GGACCATATT AATTTTTGTT
    TGGGTAGCTT TGCGTATATG TCAAATATTT TTAAAATAGT GAGAGAGAGA
    TAAATTATCT TCAGTACGTT ATTATGATCC TCAAATCAAA ATACGAGGAG
    ATATTTACCT TTTTTGTTCA ACTGCGGAGA TATTTACAAG GNCACACTTT
    CGAGATTAAT TANATNTCTA GTTTTTGAAC CCTGGATTCA ATACTATCAT
    T

AT5G01740.1

Model type
Protein coding
Short Description
Nuclear transport factor 2 (NTF2) family protein
Computational Description
Nuclear transport factor 2 (NTF2) family protein; CONTAINS InterPro DOMAIN/s: Wound-induced protein, Wun1 (InterPro:IPR009798); BEST Arabidopsis thaliana protein match is: senescence associated gene 20 (TAIR:AT3G10985.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G01747.1

Model type
miRNA
Short Description
MIR164/MIR164B; miRNA
Curator Summary
Encodes a microRNA that targets several genes containing NAC domains including NAC1. Overexpression leads to decreased NAC1 mRNA and reduced lateral roots. Loss of function mutants have increased NAC1 and increased number of lateral roots. Also targets ORE1 to negatively regulate the timing of leaf senescence. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UGGAGAAGCAGGGCACGUGCA
Link
InterPro Scan - TAIR